Xenopus laevis (African clawed frog): 108710307
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Entry
108710307 CDS
T01010
Symbol
acan.L
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xla00535
]
108710307 (acan.L)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108710307 (acan.L)
04091 Lectins [BR:
xla04091
]
108710307 (acan.L)
Proteoglycans [BR:
xla00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108710307 (acan.L)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108710307 (acan.L)
Lectins [BR:
xla04091
]
C-Type lectins
Lecticans
108710307 (acan.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
V-set
EGF
Sushi
hEGF
EGF_TEN
I-set
EGF_CA
ig
Antimicrobial25
Ig_3
Ig_2
Motif
Other DBs
NCBI-GeneID:
108710307
NCBI-ProteinID:
XP_041442783
Xenbase:
XB-GENE-6486824
UniProt:
A0A8J1MMW8
LinkDB
All DBs
Position
3L:complement(115750169..115814476)
Genome browser
AA seq
1682 aa
AA seq
DB search
MTTLLLVFVCLRVIAAAISVEVTDHHNTLSVIIPLDLPLNVQLGHSLTIPCFFINALDGV
TVAPSTAPLTPRIKWSKHVKGKETVLLVATDGHVRVNEAYNGRVSMPTYPLAPTDVSLEI
SNILSNDSGTYRCEVMHGIEDSQATVEVNVKGVVFHYRAISTRYTLDFEKAKKACIQNSA
TIATPEQLQAAYDDGYHQCDAGWLSDQTVRYPIHNPREACYGDKDMFPGVRTYGVRETDE
TYDVYCYVEDMQGEVFYATSPEKFTFDEAEKQCKSLGARLATTGELYVAWKSGMDVCSAG
WLGDRSVRYPISIARPNCGGNLVGVRTVYLHPNQTGYPNPLSRYDAICYKAGPDEDITIQ
TITQPSLEIIIPRNDTEEEARGSIASLEPTNFTLTPTDLEEFFTATPELVLTEGPFENVT
EEVFPLENITALAQTEAPGTVNVTFSEGPEFNATTSLEEEIVPVTAAPAEVEPEKHIAKT
GVVFHYRAASSRYSLNFTEAKKACLVNNAIIATPAQLQAAYEAGFDQCDAGWISDQTVRY
PIVTPRENCHGDKNGFPGVRNYGVVNPAARFDVYCFIDKLHGEVFFATQPDQFTFQEANE
FCDEQNATLASTGQLYVAWKLGLDKCRAGWLSDGSVRYPIVTPRKACGGDIPGVRTVYLH
ANQTGFPDPLSKYHAFCFREEIPEIPSIKEEVIVTQVVSELETLPSGEGPTAEIETTTDF
ENQTDFWMANVTESPTIEPSVTVSPSVVPIVSPAPEDISGETSGIGSAISGEPSGVPSGE
VSGDVSGADLSGQPSGTEESGFPSGTDISGVSGLPSGDVSGDVSGDISGDVSGDISGEEP
SGEPDISGLHSGFPSGAEDISGQVSGFPDISGLSSVPIETSGLSSGELSGDEIISGSASG
IEIISGFSSGIEDVSGIASGFPTITHVDTTWVESVTKPTETELEGKGEIEFSASSGIELS
GDLSGLESSGDLSGFDLSGVTSSVIESSGDISGFISGDISGEPSGMIDLSGEVSGVTDIS
GELSGLKDFSGEASGVLDFSGELSGLSGESSGIISVSSGYSGDIGISGEASGIREISGEL
SGVPDISGLGSGILEIPSGVILIDQSLKELSQPPKKEEEGKGSVGISGFYSGDVDSSGDI
SGILDVSGEPSGLIDISGFMSGGIPSGDIDISGLSDISGAVSGSEYVSGLQSGFDDVSGV
PTVSHIDFTLKEPPTQGPDTQEAGGSPSVILEFSGIASGETLPSGTHEGSLESSGIYTSG
SVTLITDDSVEAITKPAVSQELGGVTFAYTIETSASGDIGTETSATHETSGKQETTLEGS
TEPSSGHITFLAPESSGEISETSESETTHAPEEAQQETELVTSVASGEVTDEPTIETASP
SSPITIESEGVIGSCADQPCGAGTCTEKEGRIYCACPAGFGGDLCNIDIDECHSSPCVNG
ATCVDGIDSFKCLCLPSYGGDLCQIDLEVCEDGWTKFQGHCYKHFSERETWVDAENVCRY
HQSHLASILSPEEQEFVNSNAQDYQWIGLNDKTIENDFRWSDANPLQYENWRPNQPDNFF
TTGEDCVVMIWHERGEWNDVPCNYHLPFTCKKGTVACSDPPAVQNAYTLGKKKVRYEISS
LVRYQCNQGYLQRHVPIIRCLPTGHWDEPRILCIDLSTYRRHKRSPRSRSRAIATSEQGK
AH
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttgctattagtgttcgtttgcttgcgggtcatcgctgcagcgatatccgta
gaagttacagaccatcacaacacactgagcgtgattatacctttagatcttccactgaac
gtccaacttggacattcccttaccatcccttgtttcttcatcaacgctttggatggtgtg
actgtggctccctcaacagcccccttaacaccaaggatcaagtggagcaaacatgtcaaa
ggaaaggaaaccgttctgctggtagccacagatggacatgtccgtgtaaatgaagcctac
aatggacgagtctctatgcccacctacccacttgcccctactgatgtcagcctggaaatt
tccaacatactgtccaatgattcaggaacctaccgctgtgaagtgatgcatggaatagaa
gacagccaagctacagtagaggttaatgtgaaaggggttgttttccactacagagcaatc
tctaccagatatactttggactttgaaaaagccaagaaagcatgcatacagaacagcgcc
accattgccacccctgagcagctccaggcagcatatgatgatggttaccaccaatgtgat
gctgggtggctttctgaccagacggttcgttatccaatccataatccacgtgaagcctgt
tatggagacaaggacatgttcccaggagtgagaacatacggagttcgtgagactgatgaa
acctatgatgtgtattgctatgttgaggatatgcagggtgaagtgttttatgcaacatct
cctgaaaagttcacttttgatgaagcagaaaagcaatgtaagagccttggtgccaggttg
gccactactggagagctctatgtggcatggaaaagtggaatggatgtgtgcagtgcgggt
tggttgggagaccgcagtgttaggtaccctatatcaatagctcggcctaactgtggtgga
aacttagtaggagtaagaacagtttatcttcatcccaaccagactggatatcctaatcct
ctatctcgctatgatgctatctgctacaaagctggaccagatgaggatatcactattcag
accattacacaaccaagtttagagatcatcatcccccgtaatgatacagaagaagaggct
cgtggcagtattgcttcccttgaaccaactaattttactctcacacctactgatcttgag
gaatttttcacagcaaccccagagcttgtgctaacagaagggccatttgaaaatgtcaca
gaggaagtatttcctctagaaaatattacagcattagcccaaacagaagcccctggtaca
gtaaatgtgacattctccgagggtccagagtttaatgcaacaacatctttagaagaggaa
atagttcctgtaacagctgctcctgctgaagttgagccagaaaaacacattgctaagact
ggagttgtctttcattaccgtgctgcttccagtcgatattctctcaacttcaccgaggcc
aagaaggcatgtctggtcaataatgctatcattgcaacccctgcgcagctccaggctgcc
tatgaagctggatttgatcaatgtgatgctggatggatatcagaccaaactgtcagatac
cctatcgtcactccaagagaaaactgtcatggagataagaatggatttcctggggtgaga
aattatggagtggtcaacccagctgcacgttttgatgtgtactgcttcattgataaactt
catggagaggtgtttttcgccactcaaccagaccaatttactttccaagaagcaaacgaa
ttttgtgatgaacaaaatgccacattggcttccactggacagctctacgtggcctggaag
ttggggttggacaagtgtagagcaggctggttgtcagatggaagtgtccgctaccccatt
gtgacacctcgcaaagcctgtggaggggacatacctggagtgcgtacagtctaccttcat
gctaatcaaacaggattccctgatcctttatcaaaataccatgccttttgtttccgagaa
gaaattccagaaattccatcaattaaggaggaagttattgtgactcaggttgtctcagaa
ttagagacgttaccttctggagaaggaccaactgcagaaattgagacgaccaccgatttt
gaaaatcagacagatttctggatggcaaatgtcaccgaaagtcctactattgagccatca
gtaacagtcagtccttcagttgttcctattgtgagcccagctccagaagatataagtgga
gaaacatcaggtataggcagcgcaataagtggagaaccatctggagtgccatctggagaa
gttagtggagatgtatctggtgcagatctaagtggacaaccttcaggaactgaagaaagt
ggatttccatctggtacagacatttcgggagtgagtggactgccatctggtgatgtatct
ggtgatgtatcaggtgacatatctggtgatgtatcaggtgacatatctggtgaggaacca
tcaggtgaacctgatattagtggactgcattctggatttccttcaggagctgaagacata
tcagggcaagtttctggatttccagatataagtggattgtcttctgtaccaatagaaacc
agtggtctgtcttctggagaactatctggagatgagataattagtggctcagcttctgga
attgagataattagtggcttttcttctggtatagaagatgttagcggcattgcctctggc
ttcccaacaatcacacatgtggataccacatgggtagaatctgtaacaaaaccaacagaa
actgagctagaaggaaagggagaaatagaatttagtgcatcatcaggaatagaattaagt
ggagatctttctggcttagagtccagtggagatctttctggatttgaccttagtggggtt
acttcttcagtaatagaaagcagtggagatatctctggttttattagtggtgatattagt
ggagagccatcaggcatgattgacttgagtggtgaagtgtcaggagtaactgatattagt
ggagaattgtcaggattgaaggattttagtggtgaggcatcaggagtattggattttagt
ggtgagctatctggtctaagtggagaatcatcaggaatcatttctgtgagtagtggatat
tctggagatataggtattagtggggaggcttctggaataagagagattagtggtgagctt
tctggagtccctgacatcagtggcctgggctctggtatcttagagataccatcaggtgtt
attcttattgatcaaagtttgaaggaactctctcagcctccaaaaaaagaagaggaagga
aaagggtctgttggaataagtggcttttattcaggagatgttgacagttctggagacata
tctggtatcttggatgtcagcggtgaaccttcaggtttaatagacataagtggttttatg
tcagggggtattcccagtggtgatatagatattagtggtttatcagacataagtggtgca
gtatctggatctgaatatgtgagtggcttacaatctggatttgatgatgtaagtggagtc
cctactgtttctcatatagatttcacattaaaagagcctccaactcaagggcctgatact
caagaagcaggaggtagtccatcagtaatacttgagttcagtggaatagcttctggagaa
acattgccatcaggaactcatgaaggcagtctagaaagttcaggcatttatacatcagga
tcagtcacacttattacggatgattctgttgaagccatcacaaaacctgcagtttcacaa
gagttaggtggtgttacttttgcatacacaatagaaacatcagcatctggtgatattggc
actgagacatctgcaactcatgaaaccagtggaaagcaagaaacaactctagaaggaagc
actgaacctagctctggacacattacatttctggcaccggaatcatcaggggaaatatct
gaaacatcagaatctgaaacaacacatgctcctgaggaagcacagcaagaaacagagtta
gttacgtcagttgcatccggtgaagtaacagatgaacccacaattgaaacagccagtcct
tcaagtccaatcacaattgagtctgaaggggtaatcggatcatgtgctgatcaaccctgt
ggagctggaacatgtacagaaaaggaaggaagaatatattgtgcctgtcctgcaggtttt
ggtggagacctttgtaatatagacattgatgagtgccactcaagcccctgtgtgaatgga
gctacctgcgttgatggcatcgactcattcaaatgcttatgccttcccagctacggaggg
gacctatgtcagatcgatctcgaggtgtgtgaagatggatggaccaaattccagggtcac
tgctataaacacttttcagagagagaaacctgggtggatgcagagaatgtctgtcggtac
caccagtcccatctagcgagcattctctcacctgaagagcaagaatttgtgaatagtaac
gctcaggactatcagtggattgggctgaatgataaaacaattgaaaatgatttccgctgg
tcagatgcaaaccccttgcaatatgaaaactggaggccaaaccaaccagataacttcttt
accacgggagaagattgtgttgtgatgatctggcatgaaagaggagaatggaatgatgtt
ccatgtaactatcatctgccatttacatgcaaaaagggaacagtggcttgcagtgatcct
ccagcagtgcaaaatgcctatacgctaggaaaaaagaaagtgcgttatgaaatcagctcc
ttagtgcggtatcaatgtaaccaaggttacctacaacgccatgttcctataatccggtgt
ctacctactgggcactgggacgagcccaggatactgtgcatagatctttccacttacaga
cgacacaagagaagccccagaagtcggtcgagagcaattgccacatctgaacagggaaag
gcccattaa
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integrated database retrieval system
