Xenopus laevis (African clawed frog): 108710334
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Entry
108710334 CDS
T01010
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04140
Autophagy - animal
xla04148
Efferocytosis
xla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108710334
04148 Efferocytosis
108710334
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108710334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108710334
Membrane trafficking [BR:
xla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108710334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
zf_RING_Vps8_fungal
Beta-prop_IFT140_2nd
zf-RING_UBOX
TPR_7
TPR_PEP5_VPS11
Vps39_1
WDR55
Beta-prop_RIG_2nd
zf_RING_Vps8
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108710334
NCBI-ProteinID:
XP_041443029
UniProt:
A0A8J1MMN0
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Position
3L:140113765..140169450
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AA seq
885 aa
AA seq
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MAQGTLGNVVFRLLLVIWSQFLLKMMAEKQGILEAVGQEEMSQGESTEESEEEESEEEPK
LKYERLLNGVSEILQEDAASCMTVHEKFLALGTHNGKMYLLDIQGNVTQKFDISSVKINQ
ISLDESGEYVGIASEDGKVQVFGLYSREGLHENFDCPIKIVAVHPQFGKSNCKQFVTGGN
KLLLYDRNWLNRWKTSVLHEGEGNITNIKWRGNLIAWANNMGVKILDITTKQRITNIPRG
DTSLRPDMYPCSLFWKDNLTLVIGWGKSVKVCAVKERHATELRDLPSRYVEIVTQFDTDY
YISGIAPLCDQFVMLFFVKETSDKSETMLCARPRLDIIQAHPDSSEEISSDAITVRGFQE
NECRDYRLEYSEGESLFYIISPRDVVVAKERDQDDHIDWLLARKKYEEALMAAEISQKNI
KRHDVLDIGLSYITHLVEKRDYDMAARKCQKILGKNMKLWEDEVYRFKKIGQLKAISKYL
PRGDLRLRPAIYEMILDEFLKTDYEGFSTLIREWPGELYNNKIIVQALKGHLNKDPENRT
LLKALAELHTYDQRYDEALNIYLKLRHKEVFDLIHKHDLFSSIKDKIVLLMDFDTEKAVD
MLLDNEDKISIDKVVNELKDRPELQHVYLHKLFKRDHHKGQKYHEKQISLYAEFDRPNLL
PFLRDNTHCPLEKALEICHQRNFVEETVFLLSRMGNSRRALQMIMEELKDVDKAIEFAKE
QDDAELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQD
YNLQILLREGCKKILVSDSLSLLKKLHRTQAKAMLVDDESICEVCLSPLLSTDASKPLGV
VAFHCRHTFHRDCLPVASTMFTLYFCNICCAKNRGPGSAIHEMKK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagggtacgctgggaaatgtagtttttcggctccttctggtcatatggtcacag
ttcctcctaaaaatgatggctgagaagcagggaattctggaagctgtaggccaggaggaa
atgtcacaaggagaatctacagaagaatctgaggaggaagagagtgaagaggaaccaaag
ttaaaatatgagagactactgaatggtgttagtgaaatccttcaggaagatgctgcaagc
tgtatgactgtgcatgagaagtttctggcactgggaactcacaatgggaagatgtattta
cttgatattcaaggaaatgttacacagaagtttgatataagctctgtgaaaattaatcag
atcagcctggatgaaagtggtgaatatgtgggaattgcctctgaagatggcaaggtgcag
gtgtttggactttactccagagaagggctgcatgaaaatttcgactgcccaattaaaatt
gttgctgttcaccctcagtttggaaaatccaactgtaagcagtttgtaacaggtggaaat
aagctgctgttgtatgataggaattggttaaatcgatggaaaacatctgttttacatgaa
ggggaaggcaacataaccaacataaaatggagagggaatctcattgcttgggccaataat
atgggagtcaaaatattggacataaccacaaagcaaaggattaccaatattcccagaggt
gacacgagccttcgtccagacatgtatccttgtagtctcttctggaaagataacctaacc
cttgtaatcggatggggcaagtctgtcaaggtttgtgctgtaaaagagagacatgccacc
gaattgagggatttgccaagccgatacgttgaaatagttacccagtttgatactgactac
tacataagtggtatagcccctctctgtgaccagtttgtcatgctcttctttgtgaaagaa
acttcagataaatcggagacaatgttgtgtgcgagaccacgtcttgatattattcaggcc
catccagactcaagcgaggagatttcttcagatgccataacagtcagaggcttccaggaa
aatgagtgtcgtgattatcgcttagaatactcagaaggagaatctttattctatataatc
agtccaagagatgttgttgtggcaaaagaacgagaccaagatgaccacattgactggctg
ttggctagaaagaagtatgaggaagctctgatggcagcagaaattagtcagaagaacata
aagagacatgatgtattggatatcggattatcttacataacccatttggtggaaaaaaga
gattatgacatggctgcaagaaaatgtcaaaaaatactgggcaaaaatatgaaactctgg
gaagatgaagtctatcggttcaagaaaatagggcaacttaaggcgataagcaagtatttg
cccaggggagatttacgactgagacctgcaatctatgaaatgatcttggatgaatttttg
aaaacagattatgagggtttctcaacgctaataagagagtggccgggagagctgtacaac
aacaaaataattgttcaagctttaaagggtcacctgaacaaggatccagagaacaggact
ttactgaaggctctagctgaattgcatacttatgaccagcgctatgatgaagcccttaat
atttatctcaaactccggcacaaggaagtatttgatctgatacacaagcacgacctgttt
agctctattaaagacaagattgttcttctcatggactttgatacagagaaagctgttgac
atgctactggacaatgaagataaaatttctattgataaagttgtgaatgagttaaaggat
agaccggagctgcagcatgtgtacctgcacaaactgttcaaaagagaccatcataaaggc
cagaagtaccatgagaagcaaatcagcctgtatgcagagtttgaccgcccaaatctactg
ccttttcttagagacaacacacattgtccactggagaaggcgcttgaaatctgccaccag
agaaattttgtggaggaaactgtatttcttctaagtagaatgggcaacagccggagggct
ctacaaatgatcatggaagagctgaaagatgtggacaaagccatcgagtttgctaaggag
caggatgatgcagaattgtgggaggacttaatcttgtattctattgataaaccaccattt
ataactgggttactgaacaacatcgggacccatgtcgacccgatacttctgattcatcgt
ataaaagaaggaatggagattcccaatctaagagactcgctcgttaaaatcttgcaggat
tacaacctccagatcttactgagggagggatgcaaaaaaatcctggtgtcagactctttg
tcgttgttaaagaagttgcacagaacccaggccaaagccatgctggtggatgatgaaagt
atttgcgaagtctgcctgtctcccttactttccacagatgcatcgaagcctctcggtgtg
gtggcgttccactgccgacatacatttcacagagactgtttgcctgttgccagcactatg
tttacgctttatttctgtaacatctgttgtgccaaaaaccgtggacctgggagtgcaatc
catgagatgaagaagtaa
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