Xenopus laevis (African clawed frog): 108710702
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Entry
108710702 CDS
T01010
Symbol
sox5.L
Name
(RefSeq) transcription factor Sox-5-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108710702 (sox5.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108710702 (sox5.L)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108710702
NCBI-ProteinID:
XP_018107319
Xenbase:
XB-GENE-17330161
UniProt:
A0A8J0UH40
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Position
3L:complement(1209021..1343131)
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AA seq
759 aa
AA seq
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MLSEPELDRMSSKRPASPYGEADGEVAMVTSRQKMEDDGSDGLPAFHLPLHVGFPNKPHS
EEFQAVSLLTQESCDRRSPSYQHNIMELDCNKMSAFALHNVATSPMKAEDLGRQSGESLA
NAMLGTPERRKGSLADVVDTLKQRKMEELIKSEPEETPSIEKLLSKDWKDKLLAMGSGNL
GDVKGTPESLAEKERQLMAMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQ
EQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTFAAAAAAQQGFLIPPG
FSYKPGCSDPYPLQLIPTTMAAAAAATPGLAPLQLQQLYAAQLAAMQVSPGAKLPGVPQN
NLSNSISPSSIHTDKSTSSPPPKSKDDVAQPLNLSAKPKGSDSRSSSSPTSPHIPRLSST
HKPISSTSASTPIRVNSLDILSSLTSPGYLNDHDAVTKAIHEARQMKEQLRREQQALDGK
VVNSLGLNNCRTEKDKSSLDSLTQQLTGKPNEDKFSHAMMDFNLSGDSDGSAGISESRIY
REARGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQ
PYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRSRRQEMRQYFNVG
QQAQIPISTAAVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGIKQEEQHIK
EEIRGDNINGKMYDEYDVDDDPDVDYGSDSENPSATQAN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgctcagtgagcccgagctggacaggatgtcttccaagcgaccagcctctccgtatggg
gaagcagatggagaggtagccatggtgacgagcaggcagaaaatggaagacgacggcagt
gatggcctccctgcttttcatcttcctttacatgtgggttttcccaacaagcctcactct
gaggaatttcaggctgtttctttgctgacgcaagaaagttgtgaccgtagaagcccctca
tatcaacacaacataatggaacttgattgtaataaaatgtcagcatttgccctgcacaac
gtagctacctcacccatgaaggcagaagacttggggcgccagagcggggagtctttagcc
aacgccatgcttggaaccccggagagacgcaagggaagtttagcggatgtcgtggacacc
ctaaagcagaggaagatggaagagctcataaagagtgagccagaagaaacccccagcata
gaaaaacttttgtctaaagactggaaggacaagctcctcgcaatgggatcagggaacctg
ggagatgtaaaagggacgccggagagtcttgccgaaaaggagaggcagctcatggcaatg
attaaccagttgaccagtttacgggaacagctgctggcagcgcacgacgaacagaagaaa
ctggcggcttcgcaaatcgaaaagcagcggcaacaaatggagttggccaagcaacaacaa
gaacagattgcgagacaacagcagcaactcctgcaacaacaacacaaaatcaacctcctc
cagcagcagattcaggttcaaggtcaacttccgcccctaatgattccggttttcccccca
gaccagaggacgtttgcagcagcggctgcggcgcaacaagggttcctaatcccccccgga
ttcagttacaagccgggatgcagtgacccctaccctctacagctcattccaactactatg
gcagcagccgcggcagcaacacctggactggctcctctgcagttacagcaattgtacgca
gctcaactggccgccatgcaggtgtctccgggggccaaattacctggcgtaccccaaaat
aatctcagcaactccatctccccgagcagcatccacacagacaagagcacaagcagcccc
ccacccaaaagcaaggatgatgtggcgcagcccctgaacctttctgctaaacccaagggt
tccgacagtagatcttcctcatcccccacctcaccacatataccacggttaagcagcaca
cacaagcccatctcctccacgtcagcaagtacccccatcagagtcaattcattagatatc
ttgtcgtctttaacatccccggggtatttgaacgaccacgacgctgtcaccaaggccatc
catgaagcgcggcaaatgaaagagcaacttcgccgcgagcaacaggcactggacgggaaa
gtcgtgaacagtctggggctcaataactgcaggacggaaaaggacaagtcgtcgctagac
agtttgacgcagcagttgacggggaaacccaacgaagacaaattcagccacgccatgatg
gatttcaatctgagcggtgattcagatggaagcgcaggaatttccgagtccagaatatat
cgggaagcgcgaggacgaggcagcaacgagccgcacataaagcgccctatgaacgccttc
atggtctgggccaaagatgagaggaggaaaatcctacaggcgtttcccgacatgcataac
tccaacatcagcaaaatactaggttctcgctggaagtccatgacgaatctggagaagcag
ccatactacgaggagcaggcgaggctcagtaagcagcacctggagaagtacccagactac
aaatataagccgagaccgaagcgcacctgcttagtggacgggaagaagctccgaatcggc
gaatacaaggcaattatgcgcagccggaggcaagagatgagacagtatttcaatgtgggg
cagcaagcacaaatcccaattagcacagctgctgttgtttaccccggtgccatcgcaatg
gcgggcatgccctctcctcatttaccatcggagcactccagtgtatccagtagccctgag
ccaggtatgcccgtcatccagagcacttacggcatcaaacaagaagaacaacacatcaag
gaggagatacggggagacaacatcaacggaaaaatgtacgacgaatacgatgtggacgat
gaccccgatgtagactacggcagtgacagtgaaaaccctagtgcaacgcaagccaactga
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