Xenopus laevis (African clawed frog): 108711124
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Entry
108711124 CDS
T01010
Symbol
pdzrn4.L
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108711124 (pdzrn4.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108711124 (pdzrn4.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108711124 (pdzrn4.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
MiaE
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
108711124
NCBI-ProteinID:
XP_018108023
Xenbase:
XB-GENE-17333030
UniProt:
A0A974HSL0
A0A1L8GYQ7
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Position
3L:complement(71694432..71761420)
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AA seq
774 aa
AA seq
DB search
MGCNLCSFQKREEHYKLLYEVAQVNGKDILKATHEEAVEAFRNAKEPIMVQVLRKAPINR
AQGSLQEVQLVNVSTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPMEHEFY
EGNEYLSSLPTDGDRTEDFEYEEIELCRLNSQDRLGLTVCYRTDDEEDTGIYVGEVDPNG
TAARDGRIREGDRILQINGQDIQNREEAVALLSSDECKRITLLVARPELPLDEGWIDDER
HEFLEELNNQKLEEQHNEAMQNKANEGQQQKKPEEEDGTTDTATSSSNNHEKDSGLGRTD
ESQRNDESSEVENTAEYQTNTSLLVPRDLRPSQETLESIELHCNESYISGEYIDSDSLGN
PDEDCERFRQLLELKCRIKNRGEYDLYYSSSTIECSRSEHGGVEHELQLLNEELRNIELE
CQSIMQAHQRQSNRKQQEDNNDDEVRNSSTSINLQKENLSDITDHPERSDKDSSSAYNTA
ESCRSTPLNIDRSPDSSLQRIISITNKKNLRSTIVTNHFSSGINSIENSPSKSTASGQKI
VHEFQDTKLQCSQLSAQKDQSIEEIHYLSPYYSSEYKFGNIPVHARHYQSYMQLIQQNSA
VEYTQSQLNLVTMCKETQRITEPRMEWKVKIRSDGTRYITKRPVRDKLLKERALKIKEER
SGMTTDDDTMSEMKMGRYWSKEERKQHLMRAKEQKRRREFMMRSRLECLKESPQSGSESK
KEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGEKSPEGNRVHNAFLSVTTV
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcagttttcagaaaagagaggagcactacaaactgctgtatgaa
gttgcacaggtcaatggaaaggatattttaaaagctacccatgaagaagcagttgaagcc
tttcgtaatgctaaagagccaatcatggtccaggttttaaggaaagcccctataaacaga
gcccaaggaagcttacaggaagttcagctggtgaatgtcagcacccagacagacattacc
tttgagcacatcatggctttagcaaaactcagaccatccactccgccagttcctgatatt
tgtcctttcttgctttccgacagctgccattctcttcatccgatggagcatgaattttat
gaaggtaatgagtatctttccagcctgcctactgatggggacagaacagaagactttgag
tatgaggagattgagttgtgccgacttaacagtcaggatagactgggccttacagtctgc
tacagaacagatgatgaagaagatactggcatatatgtcggtgaggttgaccctaatggt
actgcagcaagagacgggcgaatcagagaaggagatagaattttacaaattaatggccaa
gatatccagaacagagaggaggctgtggcattactttccagtgatgaatgcaagagaatc
actctgctggttgcgagaccagagttaccgttggatgaagggtggatagatgatgaaagg
catgaattcttggaggagttaaacaaccaaaaattggaagaacaacataacgaagcaatg
caaaacaaagctaatgaagggcaacagcaaaagaagccagaagaagaggatggcactaca
gatactgcaacctcttcatctaataaccatgaaaaagatagtggccttggacgtactgat
gaaagtcaacgtaacgatgagagctctgaagtggaaaatacagcagagtaccaaaccaac
acatctctcctggtgccaagagatttaagaccaagccaagaaacattagaaagcattgaa
cttcactgcaatgaaagttatatttctggagaatacattgattctgattctctgggcaac
ccagatgaggattgtgaaaggtttcgccaattgttagaacttaagtgcaggatcaaaaat
agaggggagtatgatctttactattccagcagtaccattgaatgtagcagatcagaacat
ggtggtgtagagcatgaactacagctcttaaatgaagaactgagaaatattgaacttgaa
tgccaaagcattatgcaggcacatcaacgacaaagtaacaggaagcaacaggaagataat
aatgatgatgaagtgagaaacagtagcaccagcataaacttgcaaaaagaaaacctcagt
gatatcacagaccatcctgaacgatctgataaggacagctctagtgcatataatacagct
gagagctgcaggagtactcctctaaatatagatagatctcctgacagctcccttcagagg
atcattagcataactaataaaaaaaatcttagaagcactattgtaacaaatcatttttca
tctgggataaacagcatcgaaaattctccatccaaatctacagctagtgggcagaaaatt
gtacatgaatttcaggatacaaagttacaatgcagtcagttgtctgcacaaaaagatcaa
agcatagaagagatacactacctttcaccttactacagctctgaatacaaatttggaaat
ataccagttcatgcaagacattatcaaagttacatgcaacttatccaacaaaactctgct
gtagaatatacacaaagtcagttaaaccttgtaactatgtgcaaggaaacacaaaggata
acagagccaaggatggagtggaaggttaaaatcagaagcgatggaacaaggtacatcact
aaaaggccagtacgtgacaaacttttgaaagagcgtgccttaaaaatcaaagaagagcgt
agtggtatgactacagatgatgatacaatgagtgaaatgaaaatgggacgttactggagc
aaagaggaaaggaagcagcaccttatgagagctaaggaacaaaagagaagaagagaattc
atgatgagaagcaggttggagtgtctaaaagagagccctcaaagtggcagtgagagcaaa
aaggaagtcagtattattgaactaagtcataaaaaaatgatgaaaaaacggaacaaaaaa
attttggacaattggatgacaatccaagaactcatgacacatggtgaaaagtcccctgaa
ggaaacagagtacacaatgcctttctatcagtcacaactgtttga
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integrated database retrieval system
