Xenopus laevis (African clawed frog): 108711574
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Entry
108711574 CDS
T01010
Symbol
usp39.L
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108711574 (usp39.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108711574 (usp39.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
108711574 (usp39.L)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
108711574
NCBI-ProteinID:
XP_018108933
Xenbase:
XB-GENE-6485612
UniProt:
A0A974DDT0
A0A1L8H1M4
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All DBs
Position
3L:133493442..133505595
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AA seq
497 aa
AA seq
DB search
MSVEKRVKRELEEDEEDEGVAGKYRRHEHEDRRSRHCPYLDTINRSVLDFDFEKLCSISL
SHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYNIIDSSLED
ITYVLKPTFTKQQISNLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPP
LRNYFLEEENYCDIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSK
KNFQITKQGDGVDFLSWFLNALNSALGGNKKKKTIVSDVFQGSMRIFTKKLPHPDLPAEE
KEQLMQNEEYQEKMLESPFMYLTLDLPTAPLYKDEKEQLIIPQVPLFSILAKFNGITEKE
YKTYKENFLKRFQLTKLPPFLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLADEFQ
SSHKNTTYDLIANVVHDGKPNEGSYRIHVLHHGTGKWNELQDLQVTDILPQMITLSEAYI
QIWKRRDDDDEKKQQGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgagaagcgagtgaaacgggagttggaagaagatgaggaagatgagggagtt
gcaggaaaatatcggcgacatgagcatgaagacagaaggagtcgccactgcccatatctg
gatacaattaacaggagtgtattggactttgattttgagaagctgtgttccatctccctt
tcacacatcaatgcgtatgcttgccttgtttgtgggaaatacttccagggtcgaggcttg
aagtcccatgcctacatccatagtgttcagttcagtcaccacgttttccttaatctgcac
acactgaagttctactgccttccggacaactataatatcattgactcctccctggaagac
attacgtatgtgctgaagccgaccttcacaaaacagcaaatcagtaacttggacaaacag
gccaagctgtcccgagcatatgatggtaccacttacctcccgggcatcgtgggactcaat
aatatcaaagctaatgattacgccaatgctgttttgcaggctctctcaaatgttcctcct
ctgagaaattactttctggaagaagagaattattgcgatatcaagcgccctcctggggac
atcatgttcctgcttgtgcagagatttggagaattaatgcgcaaactgtggaaccccagg
aactttaaggctcatgtctccccacatgagatgcttcaggcagttgttctctgcagcaag
aaaaacttccagatcaccaagcaaggtgatggggtggactttctttcttggttcctgaac
gcacttaattctgctcttggaggcaacaagaaaaagaagaccattgtatcagatgtgttc
caaggatccatgcggatatttaccaagaagttgccccatcctgatttgcctgcagaggag
aaagagcaactgatgcagaatgaagaataccaagaaaaaatgttggaatctccctttatg
tacctgaccctagacctccccactgcccccctgtataaagatgagaaggagcagctgatc
atcccacaggtccctctcttcagtatcctggccaagttcaatggaatcacagagaaggag
tacaagacatataaggagaatttcctgaagcgattccagctgaccaaacttcccccgttt
ctgatattctgtattaaacgtttcaccaaaaacaatttctttgttgagaagaacccaacc
attgtgaatttccccataacgaatgttgatctgagagaatacttggcagatgaattccaa
tcctcgcacaaaaacacaacctacgatctcattgccaacgtagtgcatgatgggaagccc
aatgagggctcataccgtatccacgtcctgcatcacggcacagggaagtggaacgaatta
caagatcttcaggtgacagacatcttgccccagatgattactctgtctgaggcctatata
cagatctggaagagacgagatgatgacgatgagaagaagcagcagggtgcttaa
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