Xenopus laevis (African clawed frog): 108712312
Help
Entry
108712312 CDS
T01010
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xla00535
]
108712312
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108712312
04091 Lectins [BR:
xla04091
]
108712312
Proteoglycans [BR:
xla00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108712312
Glycosaminoglycan binding proteins [BR:
xla00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108712312
Lectins [BR:
xla04091
]
C-Type lectins
Lecticans
108712312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
V-set
EGF
Sushi
hEGF
ig
EGF_CA
I-set
EGF_TEN
Antimicrobial25
Motif
Other DBs
NCBI-GeneID:
108712312
NCBI-ProteinID:
XP_041444161
UniProt:
A0A8J1MRS7
LinkDB
All DBs
Position
3S:44591354..44650720
Genome browser
AA seq
1732 aa
AA seq
DB search
MTTLLLVFVCLRVIAAAISVEVSDHQNTLSAIIPVDPPLNVQLGHSLTIPCFFINALDGV
TVAPSTAPLTPRIKWSKHVKGKETVLLVAIDGHVRVNDAYKGRVSMPTYPLAPTDVSLEI
STIMSNDSGTYRCEVMHGIEDSQATVEVNVKGVVFHYRAISTRYTLDFENAKKACIQNSA
TIATPEQLQAAYDDGYHQCDAGWLSDQTVRYPIHNPREACYGDKDIFPGVRTYGVRETDE
TYDVYCYVEDMQGEVFYATSPEKFTFDEAEKQCKSLGARLATTGELYVAWKSGMDVCSAG
WLGDRSVRYPISIARPNCGGNLVGVRTVYLHPNQTGYPDPLSRYDAICYKAGPDEDITIQ
TITQPSLEIIIPRNETEEEARGSIASLEPTDFTLTPTDLEEFFTATPELVLTEGPFENVT
EEFPLENITALTQTEAPGTADVTFSEGPEFNATTSLAEEIVPATAAPAEAEPEKNISKTG
LVFHYRAASSRYSLNFTEAKQACLDNNAIIATPAQLQAAYEAGFDQCDAGWISDQTVRYP
IVTPRQNCNGDKNGFPGVRSYGVVKPTERFDVYCYIDKLHGEVFFATQPNQFTFQEAKEF
CDDQNATLASTGQLYVAWKLGLDKCRAGWLSDQSVRYPIVTPRKACGGDLPGVRTVYLHA
NQTGFPDPLSKYHAFCFREEIPDFPSVEEEVIVTQIVSELEKLPSGEEPTSEIETVTEFE
NQTDVWIANVTEISTIEPSLTVSPSVVPIASPAPEDISGESSAIGSISGEPSGEVSGDVS
GADLSGQPSGSEESGFPSGTDISGVSGLPSGDISGEKPSGEPDISGLPSGDISGEKPSGE
PDISGLPPGDISGEKPSGEPDISGLPSGDISGEKPSGEPDISGLPSGDISGEEPSGEPDI
SGLPSGFPSGAEDISGQVSGFPDISGLSSVPIETSGLPSGEPSGDEIISGSASGVEIISG
FSSGQEDVSGIASGFPTITHVDTPWVEAITKPTEIELEGKGEIELSASSGIELSGDFSGL
EPSGDVSGFDLSGATSSVIESSGDISGFISGDISGEPSGMIDLSGEVSGVTDISGDLSGL
KDFSGEASGVLDFSGELSGLSGESSGITSVSSGYSGDIGISGETSGVREISGELSGVPDI
SGLGSGILEISSGVILIDQTLTELSQTPVKEEEGKGSVGISGFYSGDVDSSGDISGILDV
SGGPSGLIDTSGFVSGAIPSGDIDISGVSDISGAVSGAEYVSGLQSGFDDASGVPTISHI
DFTLKEPPTQGPDTQEAGGGPSVILEFSGISSGETLPSGTQEGSLESSGIYTSGFSQVTL
ITDDSVEAITKPSVSQELGGVTLAYTIETSASGDIGIETSATHETTLEGSTETSSGHITF
LAPESSGEISETSESETTHAPEEAQQERELVTSIASDEVTDEPTIEAASPSSPIAIESEG
IIGSCADEPCGAGTCTEKEGRIYCACPVGFGGGLCNIDIDECHSSPCVNGATCVDGIDSF
KCLCLPSYGGDLCQIDLEVCEDGWTKFQGHCYKHFSERETWVDAENVCRYHQSHLASILS
PEEQEFVNSNAQDYQWIGLNDKTIENDFRWSDANPLQYENWRPNQPDNFFTTGEDCVVMI
WHERGEWNDVPCNYHLPFTCKKGTVACGEPPAVQNAYTLGKKKVRYEISSLVRYQCNQGY
LQRHVPIIRCLPTGHWDEPRIQCIDLSTYRRHKRSPRSRSRAIATSEQGKAH
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttactattagtgttcgtttgcttgcgggtcatcgctgcagcgatctccgta
gaagtttcagaccatcagaacacactgagcgcaattatacctgttgatcctcccctgaac
gtccagcttggacactcccttaccatcccttgtttcttcataaatgctttggatggtgtg
actgtggctccctcaacagcacccttaacaccgaggatcaagtggagcaagcatgtcaaa
ggaaaggaaacagttctgctggtagccatagacggacatgttcgagtaaatgatgcctac
aaaggacgtgtctctatgccaacttacccacttgcccctactgatgtcagtctggaaatt
tccaccataatgtccaatgattcaggaacctaccgctgtgaagtgatgcatgggatagaa
gacagccaagctacagtagaggttaatgtgaaaggggtcgttttccactacagagcaatt
tctaccagatatactttggactttgaaaatgccaaaaaagcatgcatacagaacagtgcc
accattgccacccctgagcagctccaggcagcatatgatgatggttaccaccaatgtgat
gctggatggctttccgaccagactgttcgttatccaatccataatccacgtgaagcctgt
tatggagacaaggacatatttccaggagtgagaacatatggagttcgtgaaacagatgaa
acctatgatgtgtattgctatgttgaggatatgcagggtgaagtgttttatgcaacatct
cctgagaagttcacctttgacgaagcagaaaagcaatgtaagagtcttggtgccaggttg
gccactactggagagctctatgtggcatggaaaagtggaatggatgtgtgcagtgcaggc
tggttgggagaccgcagtgttaggtaccccatatcaatagctcgacctaactgtggtgga
aacttagtaggagtaagaacagtttatctccaccccaaccagactggatatcctgatcca
ctatctcgttatgatgctatctgctacaaagctggaccagatgaggacatcactattcag
accattacacaaccaagtttagagatcatcatcccccgtaatgagacagaagaagaggcc
cgtggcagtattgcttcccttgaaccaaccgattttactctaacacctactgatcttgag
gaatttttcacagcaaccccagagcttgtcctaacagaagggccatttgaaaatgttaca
gaagaatttcccctagaaaatattacagcattaacccaaacagaagcccctggtacagca
gatgtgacattctctgagggtccagagttcaatgcaactacatctttagcagaggaaata
gttccagcaacagctgctcctgctgaagccgagccagaaaaaaacatttccaagactggt
cttgtctttcattaccgagctgcttccagtcgatattcccttaacttcactgaggccaag
caggcatgtctagacaacaatgctatcattgcaacccctgctcagctccaagctgcctat
gaagctggttttgatcaatgtgatgctggatggatatcagaccaaactgtcagataccct
atcgtcactccaagacaaaactgtaatggagacaagaatggatttcctggggttagaagt
tatggagtggtcaaaccaacggaacgtttcgatgtgtactgctacattgataaacttcat
ggagaggtgttttttgccactcaaccaaaccagtttactttccaagaagcaaaagaattt
tgtgacgaccaaaatgccacattggcttccactggacagctctatgtagcctggaagttg
gggctggacaagtgtagagcaggctggttgtcagatcaaagtgtccgctaccccattgtg
acacctcgcaaagcctgtggaggggacttacctggagtgcggacagtctaccttcatgct
aatcaaacaggattccctgatcctttgtcaaaataccatgccttttgtttccgagaagaa
attccagactttccatcagttgaggaggaagttattgtgactcagattgtctcagaatta
gagaagttaccttctggagaagaaccaacttcagaaattgagactgtcaccgaatttgaa
aatcagactgatgtctggatagcaaatgttactgaaatttctacaatcgaaccatcattg
acagtcagtccttcagttgttcctattgcgagcccagctccagaagatataagtggagaa
tcatcagctataggcagtataagtggagaaccatctggagaagttagtggagatgtgtct
ggtgcagatctaagtggacaaccttcaggatctgaagaaagtggatttccatctggaact
gatatttcaggtgtgagtggactgccttctggtgacatatctggtgaaaaaccatcaggt
gaacctgatattagtggactgccatctggtgacatatctggtgaaaaaccatcaggtgaa
cctgatattagcggactgccacctggtgacatatctggtgaaaaaccatcaggtgaacct
gatattagtggactgccatctggtgacatatctggtgaaaaaccatcaggtgaacctgat
attagtggactgccatctggtgacatatctggcgaagaaccatcaggtgaacctgatatt
agtggactgccttctggatttccttcaggtgctgaagacatatcagggcaagtttctgga
tttccagatataagtggattgtcttctgtaccaatagaaaccagtggcctgccttctgga
gaaccatctggagatgagataattagtggctcagcttctggagttgagataattagtggc
ttttcttctggtcaagaagatgttagtggcattgcctctggcttcccaacaatcacacat
gtggatacaccatgggtagaagctattacaaaaccaacagaaattgaactagaaggaaag
ggagaaatagagttaagtgcatcatcaggaatagaattaagtggagatttttctggctta
gagcccagtggagatgtttctggatttgaccttagtggggctacttcttcagtaatagaa
agcagtggtgatatctctggttttattagtggtgatattagcggtgagccatcaggcatg
attgacttgagtggtgaggtatcaggagtaactgatattagcggagatttgtcaggattg
aaggattttagtggtgaggcatcaggagtgttggattttagtggtgagctatctggtcta
agtggagaatcctcaggaattacttctgtgagtagtggatattctggagatataggtata
agtggagaaacttctggagtaagagaaattagcggtgagctttctggagttcctgacatc
agtggcctgggctctggtatcttagagatatcatcaggtgttattcttattgatcaaact
ttgacagaactttcccagactcctgtaaaagaagaggaagggaaagggtctgtaggtata
agtggcttttattcaggagatgttgacagttctggagacatatctggtatcttggatgtc
agcggtggaccttcaggtttaatagacacaagtggttttgtttcaggggctattcccagt
ggtgatatagatattagtggtgtatcagatataagtggtgcagtatctggagctgaatat
gtcagtggcttacaatctggatttgatgatgcaagtggagtccctactatttctcatata
gatttcacattaaaagagcctccaactcaagggcctgatactcaagaagcaggaggtggt
ccatcagtaatacttgagttcagtggaatatcttctggggaaacattaccatcaggaact
caggaaggcagtctagaaagttcaggcatatatacatcaggattttctcaagtcacactt
attactgatgattctgttgaagcaatcacaaaaccttcagtttcacaagagttaggtggt
gttacgttggcatacacaatagaaacatcagcatctggtgatattggcattgagacatct
gccactcatgaaacaactctagaaggaagcactgaaactagctctggacacattacattt
ttggcaccagaatcatcaggggaaatatctgaaacatcagaatctgaaacaacacacgct
cctgaggaagcacagcaggaaagagagttagttacgtcaattgcatcagatgaagtaaca
gatgaacccacaattgaagcagccagtccttcaagtccaatcgcaattgagtctgaagga
ataatcggatcatgtgctgatgagccctgtggcgctggaacatgtacagaaaaggaagga
agaatatattgtgcctgtcctgtaggttttggtggaggcctttgtaatatagacattgat
gagtgccactcaagcccctgtgtgaatggagctacctgcgttgatggcatcgactcattc
aaatgcttatgccttcccagctacggaggggacctatgtcagatcgatctcgaggtgtgt
gaggatggatggacgaaattccagggtcactgctacaaacacttttcagagagagaaacc
tgggtggatgcagaaaatgtatgtcggtaccaccagtcccatctagccagcattctctca
cctgaagagcaggaatttgtgaatagtaatgctcaggactatcagtggattgggctgaat
gataaaacaattgaaaatgatttccgctggtcagatgccaaccccttgcaatacgaaaac
tggagaccaaaccaaccagacaacttctttaccacgggagaagattgtgttgtgatgatc
tggcacgaaagaggagaatggaatgatgttccatgtaactaccatctgccatttacatgc
aaaaagggaacagtggcttgtggtgagcctccagcagtacaaaacgcctatacactagga
aaaaagaaagttcgttatgaaatcagctccttagtgcgatatcagtgtaaccaaggttac
ctacaacgccatgttcctattatccggtgtctaccaactgggcactgggatgagccgagg
atacagtgcatagatctttccacttacagacgacacaagagaagccccagaagtcggtcg
agagcaattgccacatctgaacagggaaaggcccattaa
DBGET
integrated database retrieval system
