Xenopus laevis (African clawed frog): 108712392
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Entry
108712392 CDS
T01010
Symbol
upf1.L
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108712392 (upf1.L)
03015 mRNA surveillance pathway
108712392 (upf1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108712392 (upf1.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108712392 (upf1.L)
5.6.2.5 RNA 5'-3' helicase
108712392 (upf1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108712392 (upf1.L)
mRNA cycle factors
Common to processing body (P body) and stress granule
108712392 (upf1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108712392
NCBI-ProteinID:
XP_018110104
Xenbase:
XB-GENE-17337476
UniProt:
A0A974E0Q2
A0A1L8HWC1
LinkDB
All DBs
Position
1L:complement(107437496..107463122)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQLDGQVNGPD
GMLQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIGSGPSHVTAMNI
PIPFNLVMPPMPPPGYFGQANGPALGRGMPKGKSTRGGRPKQRGIGLQGMSQGNMPNSQA
SQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagaccctcaccttcttggatacagaggag
gccgaactgctcggggccgacactcagggctcagagttcgagtttacggacttcacgttg
cctagccagacacagacacaagggcaaagccagctggatgggcaggtaaatgggcctgat
ggcatgcttcagaatggcacagtggatgatggtgtcggcaaaacaagccagttgttgggt
gagctgaacttcgaggaagatgaggaagacacctattatactaaggaccttccagttcat
gcttgcagctattgtggcatccatgatccagcctgtgttgtgtactgcaacaccagtaag
aagtggttttgcaatggtcgaggaaacacttctggcagccacatcgtaaaccatttggtc
cgagctaaatgtaaggaggtaacactccacaaagatggacctttgggggaaaccgttctg
gagtgttacaactgtgggtgtcgtaatgtttttcttcttggatttattcctgctaaagct
gactctgtggttgtactactttgtagacaaccttgtgccagtcagagcagcctgaaggat
atcaattgggatagttcccagtggcaacccctcattcaggatcgctgcttcctttcttgg
ctggtaaagataccatctgaacaggagcaactgagagcccgtcaaattacagctcaacaa
atcaacaaactggaggaactgtggaaggaaaacccatcagcaaccctagaagacctagaa
aagcctggtgttgatgaagaaccacaacatgtcttgctaagatatgaagatgcctatcag
taccaaaatatctttgggccacttgtcaaacttgaagctgattatgacaagaagcttaag
gaatcccagacccaagataacataaccgtgagatgggacctagggctcaacaagaaaaga
attgcatacttcacgttgcccaagactgattcagatatgcgtctaatgcaaggtgatgag
atttgtttgcgatataaaggagatttggcacctctttggaagggcattggtcatgttatt
aaagttcctgataattatggtgatgaaattgccattgaattgagaagtagtgttggtgca
ccagttgaagtcactcataatttccaagttgactttgtttggaaatccacttcatttgac
agaatgcagagtgctttgaagacctttgcagtggacgaaacctctgtttcaggttacatc
taccataaacttttgggacatgaagttgaagatgtgattataaaatgccagcttccaaag
agatttacagcacagggacttcctgatcttaaccactcacaggtttatgctgttaagact
gtattgcagcgcccacttagtctcattcagggcccacctggaactggtaaaactgtaaca
tcagccaccattgtttatcatctagcaaggcaaggaaatggccctgtcctggtttgtgca
ccaagcaacattgctgtagaccagcttactgaaaaaatccaccaaaccggcctcaaagtg
gttcgtctctgtgcaaagagccgtgaagctattgactcccctgtttctttcttggctttg
cacaaccaaattcgcaatatggaaagtatgcctgagctccagaagttgcaacagctgaaa
gatgagactggagagttatcctctgctgatgaaaaacgctatcgtgccttgaaaagaaca
gccgagagagagctacttatgaatgctgatgtgatttgctgtacttgtgtgggagcaggt
gaccctagacttgcaaagatgcagttccgctctatcttgattgatgaaagcactcaagcc
actgaaccagagtgtatggtgccagttgttttgggagccaaacagcttattcttgtggga
gatcactgccagcttggcccagttgtgatgtgcaagaaagctgcaaaagcaggactgtct
cagtctctttttgagagacttgtagttctgggcatccgacccattcgcttgcaggtgcaa
taccggatgcatcctgctttaagtgctttcccttcaaacatattctatgaaggatctctt
cagaatggtgttactgcagcggaccgggttaaaaaaggatttgacttccagtggcctcag
ccagataaaccaatgttcttttatgtgactcaagggcaggaagaaattgccagctctggt
acctcttatttaaacagaactgaagctgctaatgtggagaagatcaccacaaagcttctt
aaggcaggagccaaaccagatcaaattgggataatcacaccatatgaaggccagcgctct
tacctggttcaatatatgcagttcagtggctccttgcatacaaaactctaccaggaggtt
gaaattgcaagtgtggatgcttttcaggggcgtgagaaagactttattattctttcttgt
gtacgagccaatgagcatcaagggattggattcttaaatgatccccgccgtcttaatgtg
gctttaaccagagcaaggtatggggtaattatagttggaaaccccaaagctctttcaaag
cagccactgtggaatcatctcttgaattattacaaggaacagaaagttcttgtagagggt
cctctaaataatctaagggagagtctcatgcagttcagcaaacctcgcaaacttgtcaac
accattaatcctggtgcccgtttcatgacaactgcaatgtatgatgctcgtgaagccatc
atccctgggtctgtttatgatagaagcagtcaaggacgtccctcaaacatgtactttcaa
acccatgatcagatcggcatgattggctctggacctagtcatgtgactgctatgaacatt
ccaataccattcaatctagttatgcctccaatgccaccaccgggctactttggacaggca
aatggaccagctctaggacgtggcatgcctaaaggaaagtcaacacgtggtggacgtccg
aaacagcgaggcattgggcttcaaggcatgagtcaaggaaatatgccaaacagtcaggcc
agtcaagatgttgtatcccaaccattctcacaaggccctctaacgcagggttatatttcc
atgagtcagccatcccagatgagccagccaggactctcccagccggagttatcgcaggat
agctatcttggtgatgaatttaagtctcagatcgatgttgcattatcgcaagactctacg
taccagggagaacgtgcgtatcaacatggtggtgtcactgggctgtcccagtactag
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integrated database retrieval system
