Xenopus laevis (African clawed frog): 108712553
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Entry
108712553 CDS
T01010
Symbol
rtcb.S
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xla03016
]
108712553 (rtcb.S)
Enzymes [BR:
xla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108712553 (rtcb.S)
Transfer RNA biogenesis [BR:
xla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108712553 (rtcb.S)
Prokaryotic type
tRNA splicing ligases
108712553 (rtcb.S)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
108712553
NCBI-ProteinID:
XP_018110280
Xenbase:
XB-GENE-17345355
UniProt:
A0A1L8GQR4
A0A974D888
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All DBs
Position
3S:4436775..4445110
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIRKGFVPNMQVEGVFYVNEPLEKLMFEELRNACRGGAAG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARVSS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaatgacgagttacagtatctggacaagatccataagaactgctgg
cggatccgcaagggctttgtgcccaacatgcaggtggaaggagtcttttatgtgaatgag
cccctggagaagctgatgtttgaggagctgagaaacgcttgtcgcggtggagccgctgga
gggttccttcctgccatgaagcagatcggcaatgtcgcggctttacccgggattgttcac
aaatctattgggctaccagatgtccactccggctatggatttgccattggaaacatggcg
gcgtttgatatggacaaccctgaagccgttgtctccccaggtggtgtcggctttgacatc
aactgtggggtccgactgcttcgtacaaacctggatgagagcgacgtacaaccagtgaag
gagcagcttgcccagtccatgttcgaccacatccctgtaggggtcgggtccaaaggtgtt
atccctatgggagccaaggaccttgaggaagcccttgagatgggggtggactggtcgctg
agagaaggctacgcatgggccgaggacaaggaacactgtgaggaatatggccggatgctg
caggccgaccccaacaaggtctcctctaaggctaaaaagcgaggcctgccccagctgggg
accctcggagctggaaaccattatgccgaagtccaggtggtcgatgacatttacgacgag
tacgctgccaagaaaatgggcatcgaccacaagggccaggtgtgcgtcatgatccacagc
ggcagccgaggcttggggcatcaagtggcaacagatgctctggtcgccatggagaaagca
atgaagagggacaagatcactgtgaatgatcgccagttggcatgcgcccgcgtttcctcc
actgaggggcaggattatctcaaaggcatggccgctgcaggcaactacgcttgggtcaac
cgctcgtccatgaccttcttaaccagacaggccttctccaaagtattcaacacgactccg
gacgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggagcag
cacgtggtggatgggaaggagaggacactgctggtgcacagaaaggggtccacccgagcc
ttccctccccatcatcccctcattcctgtggattatcagttgaccgggcagccagtattg
atcggtggaaccatgggaacctgcagctacgtcctcactggaactgagaaaggcatgacc
gagacgtttggcactacctgccatggtgctggtcgtgccctctccagagccaaatcaaga
agaaaccttgatttccaggatgtgctggacaaactggccgacatgggcatcgccatccgc
gtggcttccccaaaactggtcatggaagaggctcctgaatcttataagaacgtcacagac
gtagtgaatacctgtcacgatgccggcatcagcaagaaagccatcaagctccgccccatt
gcggtcatcaaaggttga
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