Xenopus laevis (African clawed frog): 108712744
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Entry
108712744 CDS
T01010
Symbol
usp39.S
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108712744 (usp39.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108712744 (usp39.S)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
108712744 (usp39.S)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
108712744
NCBI-ProteinID:
XP_018110624
Xenbase:
XB-GENE-17335334
UniProt:
A0A8J0UUX6
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Position
3S:complement(27559484..27571000)
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AA seq
522 aa
AA seq
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MHAARGCVITPKRGEKRRRVNEGRMSAEKRVKRELEEDEDDEGVAGKYGRYETEDRRSRH
CPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVF
LNLHTLKFYCLPDNYNIIDSSLEDITYVLKPTFTKQQISHLDKQAKLSRAYDGTTYLPGI
VGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYCDIKRPPGDIMFLLVQRFGELMRKL
WNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVDFLSWFLNALTSALGGNKKKKKTI
VTDVFQGSMRVFTKKLPHPDLPAEEKEQLMQNEEYQEKMLESPFMYLTLDLPTAPLYKDE
KEQLIIPQVPLFSILAKFNGITEKEYKTYKENFLKRFQLTKLPPFLIFCIKRFTKNNFFV
EKNPTIVNFPITNVDLREYLAEEFHSTHKNTTYDLIANVVHDGKPNEGSYRIHVLHHGTG
KWYELQDLQVTDILPQMITLSEAYIQIWKRRDDDDEKKQQGA
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcggcgagggggtgtgtcatcactccaaagagaggcgagaagcgcaggagagtc
aatgaaggcagaatgagcgctgagaaacgggtgaaacgggagctggaagaggacgaggat
gatgaaggggttgcaggaaagtatggacggtatgagactgaagacagacgaagccgccat
tgcccatatctggataccattaacaggagtgtcttggactttgattttgagaagctgtgt
tccatctccctttcacatatcaacgcgtatgcttgcctcgtttgtgggaaatacttccag
ggtcgaggcttgaagtcccatgcctacatccatagtgttcagttcagtcaccacgttttc
cttaatctccacacactgaagttctactgcctgccggacaactataatataattgactcc
tccctggaggacatcacgtatgtgctaaagccaaccttcacaaagcagcaaatcagtcac
ttagacaaacaggccaagctgtctcgagcatatgatggtaccacttacctcccgggcatt
gtgggacttaacaatatcaaagccaatgattatgccaatgctgttttgcaggctctctcc
aatgttcctcctctgaggaattactttctggaagaagagaattattgtgatatcaagcgc
cctcctggggacatcatgttcctgcttgtgcagagattcggggaattaatgcgcaaactg
tggaaccccaggaattttaaggctcacgtctccccacatgagatgcttcaggcagttgtt
ctctgcagcaagaaaaatttccagatcaccaagcaaggtgatggggtggactttctgtct
tggttcctgaatgcacttacttctgctcttggaggcaacaagaagaagaagaagaccatc
gtaacagatgtgttccaaggatccatgcgggtatttaccaagaagttgccccatcctgat
ttgcctgcagaggagaaagagcaactgatgcagaatgaagaataccaagaaaaaatgttg
gaatctccctttatgtatctgactctggacctccccactgcccccctgtataaagacgag
aaggagcagctgatcatcccacaggttcctctcttcagcatcctggccaagttcaatgga
atcacagagaaggagtacaagacatacaaggagaatttcctgaagcgattccagctgact
aaacttcctccgtttttgatattctgcattaaacgctttaccaaaaacaatttctttgtt
gagaagaacccaaccattgtgaatttccccataacgaatgtggatctgagagaatacttg
gcagaagaattccattctacgcacaaaaacacaacctatgatctcattgccaacgtagtg
catgatgggaagcccaacgagggctcataccgtatccacgtcctgcatcacggcacagga
aagtggtatgaattacaagatcttcaggtgacggacatcttgccccagatgattactctg
tctgaggcctatatacagatctggaagagacgagatgatgatgatgaaaagaagcagcag
ggggcttaa
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