Xenopus laevis (African clawed frog): 108713441
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Entry
108713441 CDS
T01010
Name
(RefSeq) transcription factor Sox-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108713441
Transcription factors [BR:
xla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108713441
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
108713441
NCBI-ProteinID:
XP_041445602
UniProt:
A0A8J1MV13
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Position
4L:1228897..1490231
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AA seq
804 aa
AA seq
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MPSTSEVLTGVVGDHLNDEWKEDHFIRMSSKQAASPFTCKAEGEEEMTGDLASREMNECK
DQIMASHLPLHPLNHNKPLSEELPSLVTTLPADVDWDSMISSQHRMDSESNKLRSLYSFR
TTSTSPHKPDEGARERSDLMSAVNFGTPERRKGSLADVVDTLKQKKLEEMTRSEQEDSTC
VEKILSKDWKDKMDRLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQ
KKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIF
PHDQRTLAAAAAAQQGFLFPPGLSYKPGDNYPMQFIPSTMAAAAASGLSPLQLQQLYAAQ
LATMQLSPGAKMPTTPQPANATGALSPTGMKSEKRGTSPVAQIKDEAAQPLNLSARPKTA
DPVKSPTSPTQNFFPVSKSSPVSLTNKSGIPSPIRGPSLDILSSLNSPALFGDQDTVMKA
IQEARRMREQIQREQLHPPHGLDGKLNLNNMGLNNCRGDKVLVDAFTGKICIRSAHTERT
HYENLGPQLSGKPNEEGKLGPGVIDLTRPEDVEGGATVVEARVYRDSRGRSSSEPHIKRP
MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEK
YPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPISTATGVVYP
GAISMTTTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKLDSGSLGGNDLMNGEDEMEMY
DDFEDDPKSDYSSENEANEAVSAN
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaacctctgaagttctgaccggcgtggtaggagatcacctcaacgacgagtgg
aaggaggaccacttcataaggatgtcttccaagcaagccgcctctccattcacttgtaaa
gcggaaggagaggaagagatgactggggatttagcatcacgagaaatgaatgaatgtaaa
gatcagatcatggcctcccacctgcccctgcaccccctgaatcacaacaaacctctctca
gaggagctaccgtcacttgtcactaccctaccggctgatgttgactgggacagcatgatc
tcttcccaacacagaatggactcagagagcaataaactccgttccctgtactccttccga
accacgtctacctcaccccacaagcctgacgaaggggctcgcgagcgcagtgacctcatg
agcgccgttaatttcgggacgcccgagcggaggaaggggagtttggcggatgtggtggat
acactgaaacagaagaaactggaggaaatgacccgatctgagcaggaggattctacttgc
gtggagaaaattctctccaaggactggaaagacaaaatggatcgtctgaacaccagtgag
cttctcggggagattaaaggcaccccggagagcttagcagagaaagagcgtcagctttcc
accatgatcacccaactcatcagcctccgagagcaactcctggcagcccacgatgaacag
aagaaactggcggcttcacagattgagaaacagaggcaacaaatggatctggcgaggcaa
cagcaggaacagatcgcaagacaacagcagcaactcctgcagcagcagcacaagatcaac
ctcctgcagcaacaaattcaggttcaggggcacatgccccccctaatgatcccgatattc
ccacacgaccagcgcacgttggcagcagcagcggctgcacagcagggattcctcttcccc
ccgggactttcctacaaaccaggtgataactaccccatgcagttcattccatctacaatg
gcagccgccgccgcttctgggctcagtccgttgcaactgcagcaactgtacgcagcccaa
ctggccaccatgcaactgtctcctggtgccaaaatgcccacgaccccacagcccgcaaat
gccaccggagctctgtcacccacgggcatgaaaagtgaaaaaagagggaccagcccagta
gcacagatcaaggacgaagcagcgcagcctctgaatttatctgcccgaccgaaaactgcc
gaccccgtcaaatctcccacgtcccccacccaaaacttcttcccagtcagcaaaagcagc
ccagtgagtctgaccaacaagagcggaatccccagtcccatacggggaccttccctagac
atcctttctagtcttaattcacctgccctgtttggggaccaggacacagtcatgaaagcc
atccaggaggctcgacgaatgagagaacagattcagagagagcagctgcacccgccccac
gggctcgacgggaaactgaacctaaataatatgggactgaacaactgcagaggcgataag
gtgctggtagatgccttcactgggaagatttgcattaggagtgcacacacagagagaaca
cactatgaaaatctgggcccccagttatccgggaaacccaacgaggaagggaaattgggg
cctggagtcatcgatctcacaagacctgaagatgttgagggaggcgccactgtggtcgag
gctcgagtctacagggactcacggggtagaagtagcagtgaacctcatataaagcgacca
atgaatgctttcatggtttgggcaaaggacgagagaaggaaaattctccaggctttcccg
gacatgcacaactccaacattagtaaaattttaggttcccgttggaaatccatgtctaac
caggagaagcaaccatactatgaagaacaagctcgactaagcaaaattcaccttgagaaa
taccccaactacaagtacaaaccccggccgaaacgtacctgtattgtcgatggcaaaaag
ctccgtattggagagtacaagcagttgatgaggtctcgaagacaggagatgaggcagttc
tttactgttgggcaacagcctcagataccaattagcacagcaactggcgttgtgtatccc
ggcgccatttccatgacaacaacgacaccatcacctcagatgacatcagattgctccagc
acgtccgccagccccgagcccagcatccctgtcatacagagcacatacggcatgaagctg
gacagtggaagccttggtggcaatgacctgatgaacggagaagatgaaatggaaatgtat
gatgactttgaggatgatcccaaatcagactatagcagtgaaaacgaagccaatgaggct
gttagtgccaactga
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