Xenopus laevis (African clawed frog): 108713846 Help Entry 108713846         CDS       T01010                                  Symbol ighmbp2.L Name (RefSeq) DNA-binding protein SMUBP-2   KO K19036   ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] Organism xla  Xenopus laevis (African clawed frog) Brite KEGG Orthology (KO) [BR:xla00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:xla03009]     108713846 (ighmbp2.L)    03012 Translation factors [BR:xla03012]     108713846 (ighmbp2.L) Enzymes [BR:xla01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      108713846 (ighmbp2.L)     5.6.2.5  RNA 5'-3' helicase      108713846 (ighmbp2.L) Ribosome biogenesis [BR:xla03009]  Eukaryotic type   Other ribosome biogenesis factors    108713846 (ighmbp2.L) Translation factors [BR:xla03012]  Eukaryotic type   Initiation factors    Initiation associated factors     108713846 (ighmbp2.L) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_30 AAA_19 R3H Viral_helicase1 ResIII zf-AN1 Helicase_RecD DEAD nSTAND3 AAA_22 UvrD-helicase AAA_16 IstB_IS21 SLFN-g3_helicase Flavi_DEAD AAA_25 ABC_tran AAA Zot ATPase PhoH AAA_18 NTPase_1 Herpes_ori_bp ATPase_2 SH3_12 AAA_33 Motif Other DBs NCBI-GeneID:  108713846 NCBI-ProteinID:  XP_018113004 Xenbase:  XB-GENE-17336361 UniProt:  A0A974HN31 A0A1L8GJ95 LinkDB All DBs Position 4L:18164489..18198592 Genome browser AA seq 983 aa AA seqDB search MEEFVERQLELLREEREAEIQEKRTWQENVSLKELQRRGVCLLKLQIANQRTGLYGRLLV TFTPRKYDSESVLPSNNFGPGDIVGLYEANSPNEQLATGIVAGVTQKLINVAFDESGNDG LNLGNESTYRLLKLANDVTYKRIKRALTTLGQYRSGQASNLIDVLFCSSEPSHSVQKRPA EFFNLSLDDSQKEAVSFSLGQREVAVIHGPPGTGKTTTVVEIILQAVKEGLKVLCCAPSN VAVDNLVERLSTFKEKILRLGHPARLLESLQHHSLDAVLARGDNAQIVADIRRDIDQTFA KMKKLRGKEEKSGYKMEIKALRKELKVREEAAMVETLKRANVILATNTGASLDGPLKLLP EDYFDLVVIDECAQALEASCWISLLQAKKCILAGDHKQLPPTIISHKAAANGLSLSLMER VTDKYGEKVVKMLTVQYRMHQSIMQWASDALYGGRLIAHSSVAHHLLKDLPGVSVTEETS IPLLLIDTAHCGLFEMEVEDEQSKGNPGEVRLVDLHIQALTKAGVKPQDIAVIAPYNLQV DMLRQCLRQRYPDLEIKSVDGFQGREKEAVVLSCVRSNSKGEVGFLAEDRRMNVAITRAR RHVAVICDSHTVGNHQFLKDLVTYFNERGEVRTAFEYLEDVVPEKYSHENGTPGKPEKQA KKVGNKQKKPNTGGPSNQNRADPTKTISKEKFKYPFKHHDKLDPHTDDVTAGDHLRKTIE DFLKDPDTTQLVFPSSLTSHDRLLVHQISEELGLEHTSTGDGKERTISVTKPKAISGDAV SSQTNDSEAGPPLQLPRLEDEKSQKKTNCSGSSNKVDLKALHMERVQREKARQEERGRSK PDSSTSSKPAAKKNTDAKAKTIGSSKASSADADDFDALIATTMRADNTCGFAKCKTSVTT VSDFCVHCNKRFCLSHHIPEIHGCGEKAKANARMRISREGVIYSGSGSKDQSLDPTKKAH LHRKLDKKINELTSQRKTKKKEK NT seq 2952 nt NT seq  +upstreamnt  +downstreamnt atggaggagtttgtggagaggcagttggagctcctgagggaagagagagaggcagagata caagagaagagaacttggcaggaaaatgtctctttaaaagaactgcagcgtagaggagtc tgccttttaaagctgcagatcgcaaaccaaaggacagggttgtatggacgactactcgtc actttcacgcccaggaaatatgactctgaatcagtgctcccaagtaacaactttggtcca ggcgatattgtgggactgtatgaagcaaatagcccaaatgaacagcttgctacagggatt gtggctggtgttacacagaagcttattaatgtggcttttgatgaatccggtaatgatggg ttaaatctagggaacgagtctacctatcgactcctgaaattagcaaacgatgttacctac aaaagaataaaaagagctttgaccacattaggccaataccgaagtggacaagcatctaat ctcattgatgtcctcttctgctcatctgaacccagtcactcagtacaaaaaagacctgcg gaatttttcaatttgtccttggatgattcacagaaagaagctgtgagtttttctctcggt cagagagaggttgctgttattcatggtccaccgggtacgggtaaaaccaccacagttgta gaaattattcttcaagctgtgaaggaaggactgaaggtcctttgctgtgccccttcaaat gtcgctgtagacaatctggtggagcgattgtctacttttaaagagaagatcttgcgtctg ggtcacccggctcgcctgttggaatccttacagcatcattccctggatgccgtgctggca cgaggtgacaatgcacagattgtggccgacataaggagagatattgaccaaacctttgct aaaatgaaaaagctgcgcggcaaggaagagaaaagtgggtacaaaatggaaattaaagct ctaagaaaagaactgaaagtgagagaagaagccgccatggtggaaactttaaaacgggcc aatgttatacttgcgacaaacacaggcgcttcactggacggccctctgaaattgcttccg gaagattattttgacctagtggtgattgatgagtgtgcgcaggcattagaagcgagctgc tggatttctctgctgcaggctaagaagtgtattttggctggtgatcacaagcaactacct ccaactataatctcacacaaggctgcagctaatggcttatctcttagcctgatggagcgc gtcactgataagtatggagagaaagtagtgaaaatgctgaccgttcagtaccgcatgcat cagtctataatgcagtgggcgtcagacgcgctgtacggagggcggcttattgctcattcc tcggtcgctcatcatttgttgaaggatttaccaggagtttctgtaactgaggagaccagc atccctttactgctcattgacactgctcactgtggcctctttgaaatggaagtagaagac gagcaatccaaaggaaacccaggtgaagtgcgactggtggatttgcacattcaagctctc acaaaagccggtgtaaaaccgcaggatattgcagttatagcaccctataatcttcaggtg gatatgttaaggcagtgcctcagacaaaggtaccctgacctagaaattaaatctgtggat ggatttcaaggaagagaaaaagaagccgtggtactgtcctgtgtcagatccaacagtaaa ggggaagtgggcttcctggctgaagaccggaggatgaatgttgctataacacgtgcacgg cgccatgttgcggtgatctgtgattcccatacggtcggcaaccaccagttcctcaaggat cttgtaacgtatttcaacgagcgtggagaagtcaggacggctttcgaataccttgaagat gttgtgcctgagaaatactctcatgaaaacgggacccccgggaaaccagagaaacaagct aaaaaagttgggaacaagcaaaaaaagccaaatacagggggtcccagcaaccaaaatcgg gcagatcccacaaaaactatcagcaaagaaaagtttaaatatccctttaagcaccatgat aagttggatccacatactgacgatgttacagctggagaccatcttaggaaaaccatcgaa gatttcttgaaagaccccgatacaacccagcttgtgtttccttcatctcttacatcacat gatcggttgctggtccatcagatatctgaggaattagggctggagcacacaagcacagga gacggcaaggagagaacgatttccgtcaccaaacccaaagcaatttcgggagatgccgta tcttcacaaacaaacgattcagaggccgggccgcctttgcaattacccagactggaagat gaaaaaagccaaaagaagaccaattgcagcggaagttccaataaagtcgacttgaaagca ttacacatggaaagagtgcagagggaaaaagcaagacaggaagaaagggggagaagtaaa cctgatagttcaacaagttcaaaacctgcagcaaagaaaaacacagatgcaaaagctaaa actattggcagttccaaagcctccagcgcagacgcagacgattttgatgccctaattgcc accaccatgagagcggacaacacctgcggctttgccaagtgtaaaacaagtgtcacgaca gtgtcggacttctgcgtgcactgcaataagcgcttctgcttgagccaccatattccagag atccacgggtgcggggaaaaggccaaagccaacgcaagaatgaggatcagccgggaagga gttatttactcgggcagcggctcaaaagatcaatcactagatccgaccaaaaaagctcat ttacacagaaaactggataagaaaatcaatgaactgacaagtcaaagaaaaaccaaaaag aaggaaaaatga

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