Xenopus laevis (African clawed frog): 108713868
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Entry
108713868 CDS
T01010
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108713868
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108713868
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_16
TPR_12
TPR_19
HAT_Syf1_CNRKL1_C
TPR_2
TPR_6
TPR_8
TPR_10
TPR_11
TPR_MalT
TPR_1
TPR_21
MRG
ARM_TT21_4th
HrpB1_HrpK
T7SS_EccA1_N
DUF5717_N
TPR_5
Motif
Other DBs
NCBI-GeneID:
108713868
NCBI-ProteinID:
XP_018113033
UniProt:
A0A8J0UUW9
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All DBs
Position
4L:23273355..23297709
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AA seq
662 aa
AA seq
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MATDWRLPKAVCAEAEIPFTTEESDDEGEPIVPKEPELAPEFKVLWQEATENPYNFNGWT
KVLEYVETANNLAAGRKVYDAFLTRFPYCYGYWKKYADLELQFHNTTETEEVYSRALQSI
PLSLDLWINYIAFLNNSLDTTLPETTEKLQGAFRSGAAAAGMEFRSDKFWEMYIEWETRQ
GNLARATAVYDQVLSIPTQLYRQHHERFSQHVSTNSPHELLSQEEYKWICSKIKADGEND
QLAAEDSPSGDDQENPEDATDPELQSKIKAQVLTIRDQLFLLNEAEVRKRWNYEEAITRP
YFHATPLDHTQLQNWRKYLEFEISQGRHERIVTLYERCLVACALYEEFWLAYVQYMEPHS
IEAARCILQRACCIHLPLKPTLSLHWSAFEEKHGQTNTSRSILRDLENLMPGLAMVRLRR
VSLERRTGNLEEAERLLEEAVENSLGTDLAAFYSIKLARLLLKLQGNTEKARKVLTEALE
REPDNPRLHFCLLELEVSREASQEEAEVLLCVERALKSSLSDDIKKIMSQRRLEFLEDHG
SSITSILSAYDEHQNLLQQEELKREAENGSEDETEEKKPKTETTVVHISAPPVHVSRNPL
LPRPINYNTPLPSPVVSAPPYRPMMGPHFRPPPQPFSYGPWYQGYAAYNPAPWNYNRFYH
PH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgactggaggttgccgaaagctgtatgtgcagaagctgaaattccctttacc
actgaggagagtgatgatgagggtgaacccattgttccaaaagagccagaactggcgcct
gagtttaaagtcctttggcaagaagccacggagaacccatacaacttcaacggctggaca
aaagtgttggagtatgttgagacagcgaataaccttgcagcaggcagaaaagtctatgat
gcttttctcacacggtttccatattgttatgggtactggaagaaatatgctgacctagaa
cttcagttccataatacaactgagactgaggaggtctacagccgggcactgcagtctatt
ccacttagtttggatttgtggataaactacatagcatttctcaataacagcttggataca
acactgccggaaaccactgagaaactgcaaggagctttccgatctggtgctgctgctgca
ggcatggaattccgctcagacaaattctgggaaatgtatatcgaatgggagacacggcaa
ggaaacctcgcaagagccacagcagtctatgatcaagtacttagtatccccacccagctg
tacaggcagcatcatgaaagattttcgcaacatgtctctaccaattcacctcatgaactt
cttagtcaagaggaatataagtggatctgctccaaaatcaaggctgatggggaaaatgat
caactcgctgcagaagactccccgtctggggatgatcaggagaacccagaggatgctaca
gatcccgaattgcagtcaaaaattaaagcacaagtcttaacgataagggatcagttattt
ctccttaatgaagcagaggtcaggaaacggtggaattatgaagaggcgatcactcgtccg
tattttcacgcaacaccattagatcacacccagttgcaaaactggcgaaaatacctggag
tttgaaatctctcaaggtcgccacgagcgcattgtgacattgtatgaacgatgcctggtg
gcctgtgcattatatgaggaattctggctggcttatgtccagtatatggagcctcattct
attgaagctgcccgttgtatattgcaacgagcatgttgcattcatttgcctttaaaacct
actctgagcttacactggtcggcgtttgaggagaagcatggacaaacgaacacttcacgt
tcaatattgcgtgacctggaaaatttgatgcctgggcttgccatggttcggttaagacgt
gtgagcctggagaggcggactgggaatttagaagaggccgaacgtcttttggaggaagct
gtagagaacagtttgggtacagatctagctgccttttactccatcaagttggcaaggcta
ttgctaaagcttcaaggaaacacagagaaggcaagaaaggttctaactgaagcactggag
agagaaccagataatccacggctgcacttctgtttgctcgagcttgaggtgtccagagag
gcctcacaggaagaggcagaagtattattatgtgtggaacgtgcgctcaaaagcagtctt
tcggatgacatcaagaaaattatgtcgcaaagacgtctcgaattcttagaagaccatggc
tccagtattaccagtatccttagtgcctatgacgagcatcaaaatttactgcaacaggaa
gaactgaagagggaggcagagaatgggagtgaagatgaaacagaagaaaaaaaacccaaa
acagaaacaacagtcgttcacatatccgcaccccctgtgcatgttagccgtaacccttta
cttcctcgtcctatcaattacaataccccacttccttctcctgtagtttcagcaccacct
tataggccaatgatgggacctcatttcagaccgccaccacaaccgttcagctatggaccc
tggtatcagggctatgctgcatataacccagccccatggaattacaacagattttatcat
ccacattga
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