Xenopus laevis (African clawed frog): 108713918
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Entry
108713918 CDS
T01010
Symbol
nxf1.L
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03008
Ribosome biogenesis in eukaryotes
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108713918 (nxf1.L)
03015 mRNA surveillance pathway
108713918 (nxf1.L)
03008 Ribosome biogenesis in eukaryotes
108713918 (nxf1.L)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108713918 (nxf1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108713918 (nxf1.L)
03009 Ribosome biogenesis [BR:
xla03009
]
108713918 (nxf1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108713918 (nxf1.L)
mRNA cycle factors
Stress granule specific factors
108713918 (nxf1.L)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108713918 (nxf1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
UBA_4
LRR_8
Motif
Other DBs
NCBI-GeneID:
108713918
NCBI-ProteinID:
XP_018113126
Xenbase:
XB-GENE-17330964
UniProt:
A0A8J0UZS7
LinkDB
All DBs
Position
4L:27590124..27629060
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AA seq
618 aa
AA seq
DB search
MADGGRSYIEHDDRYGGGFSMKKRRGRGPFAGKMYSDGPHKYRNKGGYGPNPRSRLEDDD
GDVAMGEAHESSRQRFMPYGHGGRRRDNKRDKKNFGGTQREPQHQGRPEYSEDKRSWSKI
TIPHGKKYEKSWLLGILQGAITVPFTAVQYHTDHSRAHFFVEDSAAAKALKQISRTFTDR
DNFKITVLTRPCPPPQAVTKDMKQEEIDHLKQCMQKRYDGAHQAMDMKAVRSDPDLVANK
VDMILNRKSYMTTMLQIIEDNVPELLSLDISDNKLFKLDDLEEITRKAPNLKILKLSHNG
LKSDRELDKIKGLKLEELWLDGNPLCDSFRDQTSYISAVRERFPKLLRLDGRELPPPITF
DVETPTTLPACKGSYLASDDIKALVLRFLQQFYASYDSEDRQGLLNVYHDEACCSLSIPS
SISQNPSRSSLGEYFKDSRNVRRLRDPTLRFKLLKHKRLNVVGFLNELPRTQHDLNSFVV
DILAHSNTLLSFVVNGIFKEVEGQSSNPVRAFSRVFAAVPGSDGGLLLVNDEQFIRDATT
EEIRKAFATPAPTPSSSPVPVLAPVPQEMVQAFIQLSGMNAEWSQKCLEDNGWDFDQAAR
IFMKLNEEGKIPSVAFMK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtggacggtcttatatcgaacatgatgatcgttatggagggggtttctca
atgaaaaaacgtagagggcgcggtccattcgcgggcaagatgtatagcgatggtccccat
aaatacagaaacaagggtggctatggacccaatccccgttctcgtctagaggatgatgat
ggagatgtggctatgggagaagcacatgaatcatcccgtcaaagatttatgccatatggc
catggtggtagaagaagagataataaaagggacaagaaaaactttggtggcactcaaaga
gagcctcagcaccagggcagaccagagtatagtgaggacaagagatcatggtccaagatc
acgatacctcatggaaagaagtatgagaagtcctggttacttggcattttgcaaggtgct
ataactgtgccctttactgcagttcagtatcatactgaccattcccgggctcacttcttc
gttgaagattctgctgctgcaaaagccttaaagcagatatccaggacatttacagacaga
gacaatttcaagatcacagttttaacacgaccatgtccacctcctcaggctgtgacaaag
gatatgaaacaggaagaaatagatcacttaaagcaatgtatgcaaaagagatacgatggt
gctcatcaagccatggatatgaaggctgtgcgaagtgaccctgatttagttgctaataaa
gtagatatgatcctgaacagaaaaagctacatgacgacaatgctgcagataatcgaggat
aatgtaccagagctactctccctggatataagcgacaacaaactcttcaaactagatgac
ttggaagagattacacgtaaagcccccaatctaaagatcctaaaactgtcacacaatggg
ctaaaaagtgatcgtgaactggataaaataaaagggcttaagctggaggagctgtggtta
gatggaaacccactttgtgattcctttagagaccagaccagttacatcagtgccgtgcga
gaacgctttcccaaactgctacgactggatggccgtgaacttcctcctccaatcacattt
gatgttgaaacaccaaccactcttcctgcttgtaagggtagttatctggcatctgatgac
attaaagcactggtcttacggtttctacaacagttttatgcttcttatgattctgaagac
aggcaaggtcttctaaatgtgtatcacgatgaggcatgttgctctttgagcattccttct
agtataagccagaacccatccaggagtagccttggagaatatttcaaggacagcaggaat
gtaagaaggcttagagacccaaccctgcgctttaaacttctcaaacacaagcggctaaat
gtggttggtttcctgaatgaacttccaagaacccagcatgacctcaattcctttgtagtg
gatatccttgctcattcaaacacattacttagctttgttgtaaatggaatattcaaagaa
gttgaaggacaatcaagcaaccctgtgcgcgctttcagtcgggtgtttgctgctgttcca
ggcagcgatggagggctgcttctagtgaacgatgaacagttcataagggacgccaccacc
gaagagatacgcaaagcctttgccacacctgctcctactccctccagtagcccagtcccc
gtcctggcacctgtgcctcaagaaatggtgcaggcgttcattcagttatctggcatgaat
gcagaatggtctcagaagtgtcttgaggacaacggttgggactttgaccaagcagctcga
atttttatgaagttaaatgaagagggaaagattcccagtgttgcctttatgaaatga
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