Xenopus laevis (African clawed frog): 108714331
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Entry
108714331 CDS
T01010
Symbol
ndc1.L
Name
(RefSeq) nucleoporin NDC1-like isoform X1
KO
K14315
nucleoporin NDC1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108714331 (ndc1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108714331 (ndc1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108714331 (ndc1.L)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
DUF5510
Motif
Other DBs
NCBI-GeneID:
108714331
NCBI-ProteinID:
XP_018113941
Xenbase:
XB-GENE-17330756
UniProt:
A0A8J0V6H3
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Position
4L:complement(92683602..92698692)
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AA seq
664 aa
AA seq
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MTMLGERQVLRWRVASSLAWSVILLPVACAVFLVLSHIHILHPIQWLTDSISDLTSSYTI
FCLLLISTILGLQCTFLMEYYTVVPSIPCSRLALIGNILLPHRILHSLAHVVMGVLASWC
CAVMSKGKYQLLVVSCTSLQSEDEADRTFLCLNESHLFQLLCGAFFGYSYSLQYFVHNMN
FLSFPSIQQYKYLQFRRCLPLIIKQSGLQALYFIRNYAVLYYFLGNIPRTWIQTSLNLHM
DRQQPSLDTLRGLLNVSLFYQTWLSATFLLATWYMIWILFRIYTTEARIFPVQTSFTEEA
EKCLPFILNSNTLPLVKYLAMQDLVLLSQYSPSRRQEVFSLSQPGGHPHNWIAISKECLN
LLSSLTSRLVAHQEAAASNGRIRVPSSPKQTRKSSSSSGASLIEDSAEQTQNLNIIPRAG
IPSLLKTTSLKSSLDTGSPFTTPGVKRVSESLDPNSPWHGSVQSPHVMRRGAKLWTSDSG
VQRNGSEVSSLSPVTLSPACNGAKQGILYMCFQHKLDQIKNFLSKRGLLIYLFSKHPEAS
SQDVFADAQIHIWALEALSHLVAASFSEDRMGVVQTSLSNILATFFTLQEAVEKHFKLPH
ASSKPARNPGSLLDCSYKTLRFSLRAALKTAIYRMTTTFGEHLHAVPVSSEHQKKLQQFL
DFKE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctcggagagagacaggttctcagatggagagtggcctccagccttgcttgg
tcagtgatacttctacctgtggcttgtgccgtctttcttgtccttagtcacatacacatt
ttacatcccatacagtggcttactgattccatcagtgatcttaccagcagttacacaatc
ttctgtctcttactgatatctaccatcttgggactgcaatgtactttccttatggagtat
tacacagtggtgccttctattccttgttctcggctggccctcattggaaacattcttctt
ccacatcgtatcctgcactctttagctcatgttgtcatgggggtgctggcctcctggtgc
tgtgctgtcatgagtaaagggaaatatcaacttctagttgtttcctgcacttcactacaa
agtgaagatgaagcagacagaacttttctttgcctcaatgagagccacctctttcaattg
ttgtgtggtgctttctttggctatagttacagcctccagtattttgttcacaacatgaac
ttcttgtccttcccatctatacagcaatacaagtacctgcaatttagaagatgtctacca
cttattattaaacagagcggtttacaggctctgtatttcattcgcaactacgccgttctc
tactatttccttggcaacattccacgaacatggatacaaacgtcactaaaccttcacatg
gacaggcagcaaccctcacttgacacactaaggggacttctgaatgtttcattattttac
cagacatggttgtctgccacttttctgcttgccacttggtacatgatctggattctcttc
agaatttatacaacagaggctcgtatcttccctgtacagacctcctttacagaggaagca
gaaaaatgccttcctttcattttgaatagtaacacacttcctctcgtaaagtatttggcc
atgcaagatcttgtgttgctgtctcagtattcaccatctagaagacaggaagtgtttagc
ctgagccagccaggtgggcatccccacaactggatcgcaatctccaaagaatgtttgaat
ttactgagcagcttgacatccagattagttgctcatcaggaagctgctgcaagtaatgga
cggatcagagttccatcctcccctaagcagactaggaagtcctcgagcagctcaggtgca
tctcttattgaagactctgctgagcaaactcagaacttaaatataattcctagagcaggt
atcccctctctactaaagactacctctctaaaatcctcattggacactggaagcccattt
acaacccctggagtcaaacgagtgtctgaatccctggacccaaattctccatggcatggc
tctgtccaaagtccccacgtcatgagaaggggtgcaaagctgtggacttcagattctggt
gttcagagaaatggctctgaggtttcctctctttccccggtaacacttagccctgcatgt
aatggtgcaaagcagggaattctctatatgtgttttcagcacaagcttgatcaaatcaaa
aacttcttgtcaaagagaggtctccttatttacctgtttagtaagcatccagaggcttct
agtcaggatgtatttgctgatgcacagatccatatttgggcactggaagcattatctcac
cttgtggctgcatctttctcagaagatagaatgggagtagtacagacttccctttccaat
atacttgcaactttctttaccttgcaagaggctgtggaaaagcattttaaattaccccat
gcatccagcaagccagccagaaaccctggtagtttactggattgttcctacaagacactg
aggttttcactccgagctgctctgaaaaccgcaatctacaggatgaccacaacctttgga
gaacacttacatgctgttcctgtgtcatccgagcatcagaagaaacttcagcaattcctt
gacttcaaagaataa
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