Xenopus laevis (African clawed frog): 108714448
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Entry
108714448 CDS
T01010
Symbol
prpf38b.L
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108714448 (prpf38b.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108714448 (prpf38b.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108714448 (prpf38b.L)
Complex C
U4/U6.U5 tri-SnRNP related factors
108714448 (prpf38b.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
108714448
NCBI-ProteinID:
XP_018114197
Xenbase:
XB-GENE-17340625
UniProt:
A0A1L8GNB4
A0A974HP54
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All DBs
Position
4L:complement(108925923..108938826)
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AA seq
503 aa
AA seq
DB search
MANNSAAAQAGAPQPAQTGGGVNKPAASGKSGNVLPLWGNEKTMNLNPMILTNVLSSPYF
KVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLL
YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPADLWDWYEDFLDDEEELDVKA
GGGCVMTIGEMLRSYLTKLEWFSTLFPRIPVPVQKHLDQQIKTKPRKVKQEGAEEVEEVE
RHTEKRSRSPKRSTSPRRSPRRSRSRSHHREHHGTSSFDRELEKEKERQRLEKESKDKRR
SRSNDRGLERRRSKSRERHRTRSRSRDRKADRRERDREKENERSRKRDYDKKGNGRDKES
DRTRDRSKECRRSQEKKERDNKRHRDDRDSRKERRHSRSRSKERKQRKSKSPSKNASSRA
HSRSKDRSNRHKEKANRRSRSTSRGRTDSAEKLRKRERSSSMEKPRKRSRSKERGHKRDG
ENKDHDYHSGDLDEKQRDKDETL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaacagcgcggcggcccaggctggggcgccgcaaccagcccagacaggcggc
ggagtaaacaagccggcggcctcagggaaatccggaaacgtgttgccgctctggggcaac
gagaagactatgaacctgaaccccatgatcctgacaaacgttttgtcctccccttacttc
aaggtgcagctgtacgaacttaagacgtaccatgaggtggtggacgaaatctacttcaag
gttactcatgttgaaccctgggagaagggcagccggaaaactgctggacagacagggatg
tgcggaggggttcgtggcgttggcactggcggcattgtttccactgctttctgcctattg
tataaactgttcaccctcaagttgacaagaaaacaagtgatgggtctcattacacacact
gactccccctacatcagggctcttggtttcatgtacataagatatacacaacctcctgca
gatttgtgggattggtatgaggattttcttgatgatgaagaggaactggatgtaaaggct
gggggaggctgtgtaatgactattggagagatgctgagatcatacctcaccaagctagag
tggttctccacgttgttccccaggattccagtaccggtccagaagcatttagaccagcag
ataaaaacgaagccacggaaggttaagcaggaaggcgcagaagaagtggaggaagtggag
cggcacacagagaagcgctccagatcgccaaaaagatcaacaagtcctcggaggtctccc
aggagatccagaagcagaagtcatcatcgagagcaccatggcacttcaagttttgacaga
gaacttgaaaaggagaaagaacgtcaaagactagaaaaagaatcaaaagataagagaaga
tcaagaagcaatgatcgcgggctggaacgcaggaggagcaaaagcagagagagacacagg
acacgaagcaggagcagagaccgcaaggctgacagaagagaaagggacagagagaaagaa
aatgagagaagtagaaaacgggactatgacaaaaaaggtaatggtagagataaagagtct
gataggaccagagatcgatccaaagaatgtaggaggagtcaggagaaaaaagagagagat
aacaagaggcacagagatgacagagattctcgcaaggagaggcggcacagcaggagcaga
agtaaagagagaaaacagagaaagagtaagagtcctagtaagaatgcaagcagtcgagct
cacagccgaagcaaagataggtcaaaccgacataaagagaaagcaaacagacgtagcaga
agcacaagtcgaggccgaacagacagtgcagagaagttaaggaaacgggagcgcagctcc
agcatggagaaaccacgtaaacgaagcaggagcaaagaacgggggcataagcgtgatggt
gaaaacaaggaccatgattaccacagcggtgaccttgatgaaaagcaaagagacaaagat
gagactctgtaa
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