Xenopus laevis (African clawed frog): 108714691
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Entry
108714691 CDS
T01010
Symbol
ptch1.L
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108714691 (ptch1.L)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
108714691
NCBI-ProteinID:
XP_018114616
Xenbase:
XB-GENE-17338927
UniProt:
A0A974DZL5
A0A1L8HYE8
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All DBs
Position
1L:complement(146870975..146949222)
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AA seq
1422 aa
AA seq
DB search
MASTAYTAELGGSGEAAAQPRVVRRRGRSRIVAPPDHDYLQRPSYCDANFALQQISEGKA
TGRKAPLFLRAFFQRQLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETNVEELWV
EVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPLEDGANILTTEALLQHLHSALEATKVQV
YMYNKPWKLEELCFKSGELITEAVYVSQIIESMYPCLIITPLDCFWEGAKLQSGMAYLPG
EDTFQWTNFDPLELLDKLKKGKLHINTWEEMINDAEVGHGYMDRPCLNPSDSNCPNTAPN
KNSTKPVDVALILSGGCYGMSRKYMHWQEELIIGGTVKNASGQIVSALALQTMFQLMTPK
QMYEHFKGYEVVSHINWNEDKAAAILEAWQRTYVQVVHQSVPQNSSQKVLPFTTTTLDDI
LKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSL
IGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREVRRLDI
FCCFSSPCVSRVIQIDPQAYTDNNDNTRYSLPPPYSSQSFAHETQITMQSTVQLRTEYDP
RTQLYYTTAEPRSEISVQPAASTPQDVIGQTPESTSSTRDLLSPFSVHGDSIQYSPDSKW
TLSSFAEKHYAPFLLKPKNKIAVILVFLALLGVSLYGTTRVRDGLDLTDIVPRETREYDF
IATQFKYFSFYHMYIVTQKADYPRVQRLLYELHKSFVGVKYVLLEGNKQLPKMWLHYFRD
WLQGLQDTFDHEWEAGKITRNDYRNASDDAVLAYKLLIQTGNSDKPINLNQLTKQRLVDA
DGIIQPNAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDIADDRPETRTIRAAEPIEY
VQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGVSSYPNGYPFLFWEQYISLRHWLLLS
ISVVLACTFLVCALFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVG
IGVEFTVHVALAFLTAIGDKNHRAALALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRY
FFAVLAILTLLGVLNGLVLLPVLLSFFGPYPEVSPTNGRDRLEVSQDPPPPPPPNIVRFP
VHPRPTQNGSDSSDSEYSSQTTVSGISEELHQYNSQQCSAAVFPRPTVVQQTNRHNPPNQ
STPSNKEPRTQQQWRSNRNQRWDSTEGSRPPPYRPRRDAFASFTEEHAGPSSRDRSGHRS
HSHNMRKTAFAPGGASVPAYGQPITTVTASASVTVAVHPSVCSHGSHGSYPFYGGYPETD
HGHFEDPHVPFNVRNERRDSKVEVIELQDVECKERTQGNASK
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgactgcctataccgccgaactgggtggcagtggggaggcagctgcccagccg
agggtagtcaggaggagaggaaggagcaggatagtagcgccgcctgaccacgactatctg
cagcggccgagctactgcgatgccaatttcgcccttcagcagatatcagaggggaaggct
acgggaagaaaagctccattgtttctaagagcattctttcaaagacaattgtttaaactt
ggttgttacatacaaaaaaactgcggaaaatttctagttgtgggccttttgatatttggt
gcttttgctgtgggattaagagcagctaatttagagaccaatgtggaagaactgtgggtt
gaagttggtggaagagtaagccgcgaattaaattatacccgccagaagataggagaggag
gctatgtttaatccacagcttatgattcagactcctcttgaagatggtgctaatatcctg
acaacggaagccctcctgcaacatctgcactctgcacttgaagccaccaaggtgcaagtc
tacatgtacaacaaaccttggaaattggaagaattatgctttaaatcaggtgaacttatt
acagaagcagtgtacgtgagccagatcatagaatcaatgtatccatgtttaataatcaca
ccactggattgcttttgggaaggtgcaaagctacagtctggaatggcatatctaccaggt
gaagacactttccagtggacaaactttgaccctttggagttgctggataagttaaagaaa
ggaaaacttcatataaacacctgggaggaaatgataaacgatgcagaagtaggccatggt
tatatggacagaccttgtttgaatccatcagatagtaattgtccaaacaccgcacccaac
aaaaattcaaccaaacctgtagatgtagcccttattctaagtggtggatgctatggaatg
tcaagaaaatatatgcattggcaagaggagctgatcattggtggcacagtgaagaatgct
agtggacaaattgtcagtgccctggctttgcagaccatgtttcaactaatgactcccaaa
caaatgtatgagcacttcaagggttatgaagtagtttcccacataaattggaatgaagac
aaagcagctgcaatcttggaggcctggcagaggacctatgttcaggttgtacatcaaagt
gtcccacaaaactcctcacagaaagttctcccttttactacaactacactggatgatatt
ctcaagtcattctcagatgtgagcgttatcagagtcgcaagtggctatctgctgatgctt
gcctatgcctgtttaaccatgctgaggtgggactgtgccaagtcccagggtgccgtgggg
ctagcaggagtcttgctggttgcgctttcagtggctgctggattgggtctatgttcattg
attggaatttcctttaatgcagcaacaactcaggttttgccttttcttgcgcttggggtt
ggtgtagatgatgtcttccttttagcacacgcttttagtgaaactgggcagaataaaagg
attccatttgaggacagaaccggtgagtgtctaaagcggacaggagcaagtgtagccctt
acatctattagcaatgtcactgctttcttcatggctgccttgatacctattcctgcactg
cgggcattttctctccaagctgctgttgttgtggtgtttaattttgccatggtcctgctg
atatttcctgcaattctaagcatggacctttatcgcagggaagtccgcagacttgatatc
ttctgttgcttcagcagtccctgcgtgagcagagtgattcaaattgatccccaggcctat
acggacaacaatgacaacacacgctacagcctgcccccaccatacagcagtcaaagcttt
gctcatgaaacacaaatcacaatgcagtcaacagtccagcttcggaccgaatacgatcca
cgaacacagttgtattacaccacagcagagcctcggtctgaaatatcagtgcagccagca
gcgtcaacacctcaggatgtaattggccagactccagagagcaccagttccactagagac
ctgctttctccattctctgtacacggggactctatccagtactcaccagattcaaagtgg
acattgtcttcttttgcagaaaagcactacgccccattcctcttaaagccaaaaaataaa
attgctgtcatattggttttcttagccttgcttggtgtcagcctttatggaactacacga
gtgcgagatggcctagatttgaccgacattgtaccaagggagaccagggaatatgacttt
attgccacacagttcaagtacttttcattttaccacatgtatatagttacacagaaagca
gactatcctcgtgtccagcgtttgctttatgaacttcacaagagctttgttggagtgaaa
tatgtgctgttggagggtaacaaacaactgcccaagatgtggctgcattactttcgagat
tggctgcaaggactgcaagatacatttgaccatgaatgggaggctggaaaaattacacgc
aatgattatagaaatgcttctgatgatgctgtccttgcttacaagctgctaatacagaca
ggcaattctgataaacccattaacctcaaccagctgactaaacagcggttggtggatgca
gatggaattattcagccaaatgctttctacatctacttaacagcctgggtgagtaatgac
cctgtagcctatgctgcttcccaggccaacatacgcccacaccctcctgagtggctccac
gacatagcagacgataggcctgagaccagaacaattcgtgcagctgaaccaatagaatat
gtccagttccctttctacctcaatggtctgcgggaaacatccgactttgtggaggctata
gaaaaagtgagggcaatctgtaacaactacacaagccttggggtgtcgagctacccaaac
ggctaccctttcctgttctgggagcaatacattagtctccgtcactggctgctgttgtcc
atcagtgtggttctggcctgtacctttctggtgtgtgctctctttctcctgaacccttgg
actgctggaatcattgttatggtgttggcccttatgacagtggaactgtttggcatgatg
ggactcatagggattaagctgagtgcagtgcctgtagttattttgatcgcttcagttgga
attggagtggaattcactgttcatgttgctctggcattcctcactgctattggggataag
aatcacagagctgctcttgctttggagcacatgtttgcacctgttctggatggggctgtc
tctactttattgggcgttctgatgcttgctggatcagagttcgactttattgtcaggtac
ttttttgctgttctggcaattctaactcttttgggtgtattaaacggtttggtgctactt
cctgtacttctgtctttctttggaccttatcctgaggtctctccaactaatggcagagat
aggcttgaggtttctcaagacccaccaccaccaccaccaccaaatattgtaaggttccct
gtgcatcctagaccgacgcaaaatgggtcagattcctcagattcagaatatagttctcag
accactgtatcaggaatcagcgaagagctccatcaatataattctcagcagtgttctgca
gcagtctttccacggcccactgttgtgcagcaaacaaatcggcataatccaccaaatcaa
agcacaccatccaacaaagaacccagaactcaacaacaatggcgatcaaataggaatcag
agatgggattcaacagaaggatcacggccaccaccatacagacctcgcagagatgcattt
gcatcttttactgaagagcatgctggtcctagtagcagggataggtcagggcacagatcc
cactcccataacatgcgaaaaactgcctttgctccaggaggtgcttcagtgcctgcgtat
ggccaacctattactactgtgactgcctctgcttcagttactgttgctgtgcacccttct
gtgtgtagccacggctcccacggtagctaccccttttatggtggctaccccgaaactgac
catggacattttgaggaccctcatgtgccttttaatgtacgcaatgaaagaagggactct
aaagtagaagtaatagagctgcaagatgttgaatgcaaagaaaggacacagggaaatgcc
tcaaaataa
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