Xenopus laevis (African clawed frog): 108714711
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Entry
108714711 CDS
T01010
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108714711
Enzymes [BR:
xla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108714711
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108714711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
108714711
NCBI-ProteinID:
XP_018114654
UniProt:
A0A974D5B4
A0A1L8GPY1
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All DBs
Position
4L:140587369..140761944
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AA seq
1058 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNRVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVKCQRIS
AKELNHVLPLKSLILKLDIKCDNYSRGCDKIVKLQSLAEHAEMCDFSPAKCRNKGCSEVL
NLRDMDAHMRERCDYRAAGICQKGCGLMITHREHRLGEHCCLKALKGLNTVLQSKISGQE
TELKKRVLRSSKREKSLVSQLSAVQNELQMTALRYQKKFTEYSARLDSLTKAVASPGKGE
ESKAMTLVLHRESGSLGFNIIGGRSCVDNQDGPSSEGIYVSKLVDSGPAAKEGGLQIHDR
IIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKVFNTPTDVHLMDMGTQTEIT
FERIAALAKISSPSPSVAGLDPYLLTEEHSPAHDYFDPNDFMGGLNPEMDRDELELEEID
LYRMNSQDKLGLTVCYRTDEEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIDVNNH
EEAVALLTSEDTNVFLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASM
LQQKKLEEDGGTTDTATLLSNHLEKDSGVGRTDESTRNDESSEQENLADDHMTSNTLGSH
KKLMYSQDTLGSGDMQFSNESFISADCTDADFLGIPMDECERFRELLELKCQVQSSNQRS
RYYQNSTMETNRSDQDSVDRELEMLNDELHSIELECLNIVRAHKMQQLKDQYRDSWMLHN
SGFHNYNTSIDLGRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLETSPDNSLRRVA
EVMNCPNAEGAVGSAACSAPQKNIQTHGDSRESSPARYHLPPKDTDPSKQTEAKERKTSE
AGKTSQDKLSSSYAPPYRHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDLSNSTEPRMEWKVKVRSDGTRYITKRPVRDKLLKERAIKIKEERSGMTTDDDAISEMK
MGRYWSKEERKQHVRRSNEQKKRREYMMQSRLDCLKEKQTTEDNKEVSIIDLSHKKMMKK
RNKKVFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgaactggatcgtttcagtggggaggtggaccccgacttcaaatgcaacttg
tgcaacagggtgctggaggaccccctgaccaccccttgcgggcacgtcttctgcgcaggc
tgcgtcttgccttgggtggtgcaacagggcagctgcccagtgaaatgccagcgaatctct
gccaaggaactcaaccacgtgctgcccctgaaaagcctgatcctcaagttggatatcaag
tgtgacaactactccaggggctgcgacaagatagtgaagctgcagagcttggccgagcat
gctgagatgtgcgacttctccccggccaagtgtaggaacaagggctgcagcgaggttctt
aacctgcgggatatggatgcacacatgcgggaacgctgcgactatagggcggccgggatc
tgccagaaaggctgcgggctcatgatcacacaccgggagcacaggttgggggagcactgc
tgcctgaaagctctcaaggggctcaacactgtcctgcagagtaaaatttctgggcaggag
actgagctcaagaagagggtgctgaggtccagcaagagggaaaagtcgctggtgtcgcaa
ctgtcagccgtgcagaatgagctgcagatgacagcgctgcgctaccagaagaagttcacc
gagtacagtgcccggctggactccctgaccaaagctgtggcttccccaggcaagggtgaa
gaatcgaaagccatgactcttgttctccaccgggaatctggatccctgggatttaatatt
attggtggccgttcctgcgtggataatcaagatggaccatccagtgaagggatatatgtt
tctaaactagttgatagtggtccggcggctaaggaagggggacttcagatccacgacagg
attatcgaggtaaatgggaaagacctgtccagagccacacatgaccaggcagtagaagca
tttaaaacagcaaaagaaccgattgtagtgcaggtcctgagacgaactcctcgcaccaag
gtgttcaacactccaactgatgtgcacctcatggatatgggaacccaaacagaaataacc
tttgagcgaatagcagcgctggccaagattagttctccttccccatcagtggctggattg
gacccatatctcttaacagaggagcattctccagcacatgactattttgaccccaatgac
ttcatgggaggccttaacccggaaatggatagagatgaacttgagctggaggaaatagac
ctttacagaatgaatagccaggacaagctgggcctaactgtgtgctaccggacggatgag
gaggatgatactggaatttatgttagtgagattgatcccaacagtattgcagccaaggac
gggcgaattcgagagggagatcgtattatacagatcaatggtatcgatgtgaataaccac
gaagaagcggtagccctcctgacaagcgaagacacaaatgttttcctgctggtggcacgg
ccagaaatacagctggatgaaggatggatggacgatgacagaaacgattttcttgatgat
ttacacatggatatgttagaggaacagcatcaccaggcaatgcaatttactgccagcatg
ctccagcagaaaaaacttgaggaagatggaggaaccacagataccgccacgctattatct
aatcatcttgagaaggacagtggtgttggccgtactgatgagagcacacggaatgatgaa
agttcagagcaggaaaatcttgcagatgaccatatgacttctaacactctaggaagccat
aagaagctcatgtacagccaggatacccttggcagtggtgacatgcaattcagcaatgaa
tctttcatatcagcagactgcactgatgctgattttttggggatccctatggatgagtgt
gagagattcagggaacttttagaactgaagtgtcaagtgcagagctccaaccagcgtagt
cgctattaccagaacagtacaatggagaccaacaggagtgaccaagacagtgtagaccga
gagttagagatgttgaatgatgagctgcacagcattgaacttgaatgtttaaacattgtc
cgtgcccacaaaatgcagcagctaaaagaccagtacagagatagttggatgttgcacaac
agcggtttccacaattacaacacaagcatagatctgggccgacacgagctgtcggatatc
acagaactgccagagaaatcagacaaggatagctcaagtgcctataacactggggaaagc
tgccgtagcaccccattaactttagaaacttcccctgacaactctttgcgtagggtggca
gaagtcatgaactgccctaatgctgaaggtgcagtgggcagtgctgcatgcagtgctccc
cagaagaacatacaaacccacggagacagtcgtgaatccagtcctgccaggtaccatctc
cctcctaaggatacagatcccagcaaacaaacagaggctaaggaaagaaagaccagtgaa
gctggtaaaacttctcaggacaaactgtctagcagttatgccccaccatatcgccattct
ccatacaaacatgctcacatacccgcccatgcacagcactatcagagttacatgcagctg
atccagcaaaaatcagcagtggaatatgcacagagtcagatgagtctggtcagcatgtgc
aaagacctctccaactcaacagaacccaggatggaatggaaggtgaaggtgcgcagcgat
gggactcgatacatcaccaagcgcccagtcagggataaactgttaaaagaacgtgccata
aagataaaggaagagaggagcggtatgacaacggatgatgatgccatcagtgagatgaaa
atgggacgttactggagtaaggaggaaaggaagcagcatgtacgcagatccaacgaacaa
aagaagagacgggagtacatgatgcagagcagattggattgtttgaaggaaaagcaaacc
acagaagacaacaaagaggtcagcattattgacctcagccacaaaaagatgatgaagaag
agaaataaaaaggttttcgacaactggatgacaatccaagaactcttgactcacggcacc
aagtcgcctgatgggacccgagtctacaactctctcctgtcagtgacgacggtataa
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