Xenopus laevis (African clawed frog): 108715274
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Entry
108715274 CDS
T01010
Symbol
lrrc4c.S
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04514
Cell adhesion molecule (CAM) interaction
xla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108715274 (lrrc4c.S)
04517 IgSF CAM signaling
108715274 (lrrc4c.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xla04515
]
108715274 (lrrc4c.S)
Cell adhesion molecules [BR:
xla04515
]
Immunoglobulin superfamily
NGL family
108715274 (lrrc4c.S)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_1
Ig_3
LRR_14
ig
LRR_9
V-set
Ig_2
LRRNT
LRR_LRWD1
DUF7617
LRRCT
MurD-like_N
Sp38
Syndecan
Motif
Other DBs
NCBI-GeneID:
108715274
NCBI-ProteinID:
XP_018115777
Xenbase:
XB-GENE-17332070
UniProt:
A0A8J1KHT5
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Position
4S:17160648..17657379
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AA seq
639 aa
AA seq
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MLNKMKLHPPQMMIGPRFNRAPFDPLFIVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRNLREVPDGISTNTRQLNLHENQIQIIKVDSFKHLRHLEVLQLSRNHIRTIEIGAF
NGLANLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
EMKRLSYISEGAFEGLSNLKYLNLGMCNLREIPNLTPLVKLDELDLSGNHLSVLRPGSFQ
GLTHLQKLWIMHSQIQVIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHNLQRIQLHH
NPWNCNCDILWLSWWLKEIVTTGSTCCARCSTPPSLKGTHIAELDHNYFTCYAPVIVEPP
VDLNVTEGMAAELKCRASTSLTYVSWITPNGTIMTHGSYKVRLSVLNDGTLNFTNVTVRD
TGLYTCIVSNSAGNTTASATLNVTASDTGYTYFSTVTVETMEPSQDEARTTENHVGPTPV
IDWETTNATIFLMPQSTRFTEKTITVPVTDANNGMPGIDEVMKTTKIIIGCFVAITLMAA
VMLVIFYKMRKQHHRKNHHAPTRTVEIINVDDELTADTPIESHLPMPAIEHEHLNHYNSY
KSPFNHTMTVNTINSIHSSVHEPLLIRANSKDNVQETQI
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgaaattacatccaccgcagatgatgataggtcctaggttcaacagg
gccccatttgaccccctttttattgtgctgttggctcttcagcttcttgtggtggcgggt
ttagtcagggctcagacctgcccttctgtatgttcttgtagtaaccagttcagcaaggtc
atttgcacacgaagaaaccttcgagaggtcccagatggtatatccaccaacacaagacaa
ctcaaccttcatgagaatcagatccagataatcaaagttgacagttttaaacacttaaga
catttagaagtgttacagttgagcagaaatcacattaggacaattgaaattggtgctttc
aatggcttggcaaatctgaatacactggaactctttgacaatcgtttgaccactattcct
aatggagcttttgaatatttgtcaaaactgaaagagctttggttaagaaataatcctatt
gaaagcattccatcctatgcttttaatcgtgttccttctctgcgtaggctagatttggga
gagatgaaaagattgtcatatatttcagaaggggcatttgaaggcctttcaaatctcaaa
tatttgaaccttggtatgtgcaacctaagagaaatccccaatcttactcctcttgttaaa
ctagatgagttagatctttctgggaatcacttgtctgttcttcgacctggatctttccaa
ggattaacccatcttcaaaaattgtggattatgcattcccaaattcaggtgattgaaagg
aatgcctttgatgaccttcagtcactggttgaacttaatttggcacataataatctgact
ttactgcctcatgaccttttcacacctcttcacaatttgcaaaggattcaattacatcac
aacccctggaactgcaactgtgacatcctttggcttagttggtggctcaaagagatagtc
accactggcagcacatgctgtgctcgttgtagcactcccccaagtttaaaaggaactcac
attgcagaactggaccataattattttacttgttatgctcctgtaattgtagagccccct
gttgacctgaatgtcacagaaggcatggcagctgagctgaaatgtagagcatcaacgtca
ttgacttacgttagttggattactccaaatggaactattatgacccatggatcttataaa
gtacgtctttcagtgttaaatgatggaacgctgaactttacaaatgtaacagtgagggac
acaggcttatacacctgtatagtaagtaattccgctgggaacaccactgcctcagcgacg
ttaaatgtgacggcatctgacacgggttatacttacttttccaccgttaccgtagagact
atggaaccatctcaggatgaggcaaggaccacagaaaatcatgttggccccaccccagtc
attgactgggaaaccaccaatgcaaccatctttctaatgcctcagagcacaaggttcaca
gaaaaaaccatcaccgtccctgtaacagatgcaaacaatggaatgccaggtattgatgag
gtgatgaaaaccaccaaaataatcattggctgttttgtggccattaccttaatggcagca
gtgatgctggttatcttctacaagatgagaaaacagcatcatcggaagaaccatcatgct
cctacgaggactgttgaaattattaatgtggatgatgaactcacggctgacacacctatt
gaaagccacttgcccatgccggcaatagaacatgagcatttaaaccattataactcttat
aagtctccttttaatcacacaatgacagtgaacacaataaattcaatacacagctctgtg
catgaacctttattgattcgagcaaactcaaaagacaatgtgcaggaaactcagatctaa
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