Xenopus laevis (African clawed frog): 108715324
Help
Entry
108715324 CDS
T01010
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03022
Basal transcription factors
xla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108715324
09124 Replication and repair
03420 Nucleotide excision repair
108715324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108715324
03400 DNA repair and recombination proteins [BR:
xla03400
]
108715324
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108715324
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108715324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
108715324
NCBI-ProteinID:
XP_018115870
UniProt:
A0A974HLJ6
A0A1L8GE71
LinkDB
All DBs
Position
4S:23129582..23138528
Genome browser
AA seq
555 aa
AA seq
DB search
MRGPAARSDMATSSEEVLLIVKKVRHKKQDGALYLMAERIAWAPEGKDRFIISHLYADIK
CQKISPDGKAKVQLQLMLHSGETTNFHFSNDATAMKERDAVKELLQQLLPKFKRKANKEL
EEKNRMLKEDPVLFQLYKDLVVSQVISAEEFWANRLSLSSVESVSVNKQDVGISAAFLAD
VRPQTDGCNGLRYNLTSDIIESVFRTYPAVKLKYAENVPHNMTEKDFWKQFFQSHYFHRD
RLNSGAKDLFAECAKMDEKGLKSMVSQGVKNPMLDLMALEDKCLHEGYGISSAPPTSSTK
SIKENSNAAIIKRFNHHSAMVLAAGLRKEEAQSDQCSETSSTDGNSRDSDFFLPPVKKVK
LQEAIEYEDLDQTNGMKPIVLNLKKSDRYSHGPTPVQSQQYASSQDILSSFHSIQLQMET
YTPRLTQVLSSAAASSTTAALTPGGALMQGATQQAINQLVPNDIQLELKHLYVAVGELLR
HFWSCFPVNSPFLEEKVIKMKSNLERFQVTKLRPFQEKLRKQYLGTNLTSHLEEMLQTSY
TKFHAWQSRRLIKKT
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagaggacctgccgcccgtagtgacatggccacctcctcagaagaagtcttactgatc
gtgaagaaggtgcggcacaagaagcaggatggggccctctacctcatggctgagaggatt
gcctgggcccctgagggcaaggatcgcttcatcattagccacttgtacgcagatatcaaa
tgtcagaaaatcagccccgacgggaaagcaaaagtgcagctccagctcatgctccactct
ggggagaccaccaacttccacttctctaacgatgccactgccatgaaagagcgagatgct
gtcaaagagcttctgcagcagctgctccccaagttcaagaggaaagccaataaggaactg
gaggagaagaacagaatgctgaaggaagatccagtcttattccagctgtataaagatcta
gttgtgagtcaggtgatcagcgccgaggagttctgggccaatcggttaagtctgagctca
gtggagagtgtgtctgtgaataaacaagacgtgggaatatcggcggcgtttctggcagat
gttcggccacaaaccgacggctgcaatggactcagatacaacctgacgtctgacatcatt
gagtccgtattccgcacgtatcctgcagtgaagctgaaatacgcagagaatgtgccgcac
aacatgactgagaaggatttctggaagcagtttttccagtctcattatttccaccgggat
cggctgaactctggagccaaagacctatttgccgagtgcgccaagatggatgagaaaggg
ctaaagtccatggtgtctcagggagtgaagaacccgatgctggatctgatggcactagag
gataagtgcttgcatgagggctatggaatctcatcagcaccacccacctccagcaccaaa
tccatcaaagagaacagcaacgctgccatcataaagcgcttcaaccatcacagcgccatg
gtgctcgccgcaggcctcaggaaggaggaggcgcagagtgaccaatgcagtgagaccagc
agcacagatggcaactcccgagactctgatttctttctgcctcctgttaaaaaggtgaag
ttacaggaggccatagaatatgaggatttggaccagactaatggaatgaaacccattgtg
ctgaatctgaagaaatctgacaggtattctcatggtccaaccccagtccagtcccagcaa
tatgcctccagccaggatattctcagctctttccatagtattcaactacaaatggaaacc
tataccccaaggcttactcaggttctgtcgagcgctgctgccagtagtacgactgctgct
ctaaccccggggggggcgctgatgcagggtgccactcagcaagctataaaccagctcgtg
ccaaacgacattcagttagagctgaagcacctgtatgtggcagttggggaactgctgcgc
cacttctggtcctgcttcccggtgaactcccccttcctggaggaaaaggtgattaaaatg
aagagcaacttggagcggtttcaggtgacaaagctgcggcctttccaggagaagctccgg
aagcagtacctggggaccaatctgaccagtcacctggaggagatgctacagacatcctac
accaagttccacgcgtggcagtcccgacggctgatcaaaaagacgtga
DBGET
integrated database retrieval system
