Xenopus laevis (African clawed frog): 108715333
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Entry
108715333 CDS
T01010
Symbol
ctcf.S
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108715333 (ctcf.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
108715333 (ctcf.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108715333 (ctcf.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108715333 (ctcf.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_ZN142
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
108715333
NCBI-ProteinID:
XP_018115892
Xenbase:
XB-GENE-17331560
UniProt:
A0A8J0V564
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Position
4S:24048981..24063182
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AA seq
758 aa
AA seq
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MSGGESTPVFLLRLYASEVVKMESEMAEAIVEDSETFMKRKETKTYQRRREGGIDEDNCV
IVQSQTDLSEVPHDVNSNVQMVMMEQLDPTLLQMKTEVMEGVVSQDCDPIVDDTQIITLQ
VVNMEEQPINLGELQLVQVPVAVPMATTSVGELHAAFENEVAKEGLQEGEPMICHTLPLP
EGFQVVKVGANGEVETLEQTELQPQEEPGWQKDPDYVPPIKKSKKMKKSKLRYTEEGKDV
DVSVYDFEEEQQEGLLSDVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNL
DRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHR
RYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTH
SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS
YIEQGKKCRYCDTVFHERYALIQHQKSHKNEKRFKCDQCEYACRQERHMIMHKRTHTGEK
PYACSHCDKTFRQKQLLDMHFKRYHDPSFVPAAFVCSKCGKTFTRRNTMSRHADHCTGPD
GTDGENGGEGEVIHKKGKRGRKRKMRSKKEGSSDSEDNAEPELDDEDDEDDDDEEEEEED
ETPVEIEADPEPEEPLTPLPPPAKKRRGRPPGKANQAKQNAAVIQVEEHNTIENIIVQVK
KESDLEAEGVVETAIPTPTVEAPNGDLTPEMILSMMDR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtggggaatctactcccgtttttttgctccggctttacgcttcagaggttgta
aaaatggaaagtgagatggcggaagccattgtggaggactcggaaaccttcatgaaaaga
aaagagacaaagacatatcagaggcgtagagaaggtggtatagatgaagataactgtgtc
atagtccagagccaaacagatctaagtgaagtacctcatgatgtcaacagtaatgttcag
atggtgatgatggagcaacttgatccaactctactacaaatgaagactgaagtaatggaa
ggtgtggtttcgcaagactgtgatcctattgtggatgatacacaaataattacactgcaa
gttgttaatatggaagagcagccaattaatcttggagagctccagcttgtccaagttccg
gtagctgttccaatggccacaacatctgttggtgaacttcatgcagcttttgaaaacgag
gtagccaaagaaggccttcaggaaggggagcccatgatttgccatactttgcctctccca
gaggggttccaagtagttaaggtaggggctaatggggaagtagaaactctagaacagaca
gaattacaaccacaagaagagcctggctggcaaaaggatcctgattatgtgccccctatc
aaaaaatccaagaaaatgaagaaaagcaaactgcgctatacagaagaaggaaaagatgtg
gatgtctctgtatatgattttgaagaagaacagcaggaagggctgctttctgatgtgaat
gcagaaaaagtggttggaaatatgaagcctccaaagccaacaaaaattaagaagaaaggt
gtaaaaaagacattccagtgtgagttatgtagttatacctgtccaagacgttctaatctg
gatcgtcacatgaaaagtcacaccgatgaaaggccacataagtgccacctatgtggcagg
gctttcagaactgttactttgcttaggaaccacctcaatactcatacaggtacacggcct
cacaagtgtcctgactgtgacatggcatttgtgactagtggtgaattggtgaggcatcgt
cgttacaaacacacccatgagaaaccatttaaatgttcgatgtgtgattatgccagtgtt
gaggtaagtaagctgaagcgacatattcgatctcatactggagaacgccccttccaatgc
agcttgtgcagctatgccagcagggacacatacaagttgaaaagacacatgcgaacccat
tccggtgaaaagccatatgaatgctacatttgccatgctcgttttactcagagtgggaca
atgaagatgcacattttgcagaaacacactgaaaatgtggccaaatttcactgcccccat
tgtgacacagtaattgcaagaaagagtgacttgggagtccatttgcgaaaacaacattcc
tacattgaacaaggcaagaagtgtcgctactgtgatacagtgttccatgagcgttatgca
ctaatccagcaccagaagtctcataaaaatgaaaagcgatttaaatgtgaccagtgtgaa
tatgcctgcagacaggaaagacacatgatcatgcacaaaaggacccatactggagagaag
ccttatgcctgcagccattgtgataaaacatttcggcagaaacagctgctcgatatgcat
ttcaaaagataccatgatccaagttttgttcctgcagcgtttgtgtgctccaagtgtggg
aaaacatttactcgaaggaatacaatgtcaagacatgcagaccattgcactgggcctgac
ggtacagatggtgaaaatggaggagaaggggaagtgattcacaaaaaagggaaacgtggg
cgcaagagaaagatgcgctccaagaaagaaggttcttctgacagtgaggataatgctgaa
cctgagctagacgatgaagacgatgaagatgatgatgatgaagaagaagaagaagaagat
gagacccctgtagaaatagaagctgatcctgaaccagaagagccactgactccacttcca
cccccagcaaagaagcgcagaggaagaccgcctggtaaagccaatcaagctaagcaaaat
gcagcggttattcaagtggaggagcacaacacaattgagaacataattgttcaggtgaag
aaagaatcagacttagaagcagagggagttgttgagactgctataccaacacctacagtg
gaggcaccaaatggagaccttactccagaaatgattctgagcatgatggaccggtga
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