Xenopus laevis (African clawed frog): 108715334
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Entry
108715334 CDS
T01010
Symbol
edc4.S
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108715334 (edc4.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108715334 (edc4.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108715334 (edc4.S)
mRNA degradation factors
5'-3' decay
Decapping complex
108715334 (edc4.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_EDC4L
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
CelTOS
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
EIF3I
SYCP2_ARLD
Motif
Other DBs
NCBI-GeneID:
108715334
NCBI-ProteinID:
XP_018115895
Xenbase:
XB-GENE-17346034
UniProt:
A0A8J0V5Y7
LinkDB
All DBs
Position
4S:24133487..24212213
Genome browser
AA seq
1390 aa
AA seq
DB search
MASVTSIDVDATQHLRDILKLDRTEDSVNGNQRKSNSFSSDLNGLLVNDQVATVGTPLSD
TNLCSPAVLNSERQVICLSGDDSSSCIEITGKDVEIIASHDSNICSKARGSNKVKIQPVA
KYDWEQKYYCGNLIAVSNDYIAYATRGANGSAMVRVLSLTTAERILLKGITGSVTDLAFA
HLKSNQLACLDEAGSLFVWQLSMTNGKIQDDIVVHIRRPENTMLSNFRRIVWCPYIPEEN
EENAVEDTNQTIALLHEDKAEVWDLEIVRANHSTWPVDVSEIKEGFIIVKGHSGRLSEGA
LSPDGTVMATASHDGYVKFWQIYIEGQDQPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEV
PFWRFLITGADQNRELKVWCTVSWTSLQTIQFSPDPFSSSVLPGLKASLDLSAEFLILTD
VQRKVLYVMELKQNQDEGKATFISISEFLLTHPVLSFGIQDVNHCRLRNTEVLPSEEDNN
SINQEETLECESVESAAGVLIKLFCVHTKALQDVQIWFQPQQNAEPAILETAQPTQEDYA
LPGHMQGINTERIPSTPGSMHGSQSELCRISTDFLLLSTDSVPKLMTPDAFMSPSVSLQQ
GISSPGSIISTLTTVTPISSTSNSDTVLARSSEETPLSTILQLDASVTLSNTSRDGNLQS
SSRNPVVVIPVKSETIVLKPAAQVALSNHPLELKDLDPLVVPQPSPTRERSPDVISSAST
AIPQDIPEIASETLQRSYISSVPSGFSVEGCDSSHHTDSMSSAASALHLLSPHNLSSLDH
GHRPMIIGSSIVDNERISAPSLLESTIQEDNVDIGLPQPWPAAPDITKETRNNLVDSSRN
GQDRGDNSFHRHNYHLLQQHDSQDANAVQSDHDDVASLASISGSFGSKGQHLPIKDWKSK
LSPHSSPKLSRKSKKDEMELAQSPRISDHLVNLELQEELLCMLRSQQKELCELRQNQLEL
MKKLTDHMDAVQSSIMGHVERVIDTQQEEEQRRVERILSDGHERNGQLQEYLSQQLSHSL
SGSLCNRLDKIIREEMKKTVSQCISKTLDPVTAQLTSTVAAKITAVEGVLKENVTKMVKS
KNVTDAIGRVAADSLQAVIQSAYREAFQSIVLPAFERSCQSMFQQINNSFKQGTQEYMQQ
LEAHLRSRKINEQETRDPLVTQLQQMVDSLQTITDTLASNITSNVRSEVQHQLHIAVGNM
QDSILSQVQRVIKEEVSHAMKEQQAAVTSSIMQAMRSAAGTPVPSSHMDFHSQQTHILQL
MQQGQINQAFQQALTASDLNLILYVCETVDPQQVFGQHPCPLTQPVLLSLIQQLSFDIGS
RTEIKLNYVEEAVMHLDHSDPVTRDHMGTVLSQVRQKLYQFMQAEPQNALQKPARRLLIM
LQGLATPTLS
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggttactagtattgacgtggacgctactcagcatctacgggacatcttaaaa
ctagaccgaactgaagattcagttaatggaaaccagaggaaatctaactccttcagcagt
gatctgaacggtcttcttgttaatgatcaagttgcaactgtgggtacccccttgtctgat
acgaacctctgcagtcctgcagtgttgaattcagagagacaggtcatttgcctatctgga
gatgacagctcttcttgcattgaaatcactggtaaagatgtagaaattattgctagccac
gactccaatatatgcagcaaagcaagaggaagcaacaaggtaaagatacagcccgtagct
aaatatgattgggaacagaagtattactgtggcaatctgatagctgtatcgaatgactac
attgcatatgctactagaggtgctaatggatctgccatggtaagagttctaagccttaca
acagcagaaagaatcttactgaagggcattactggaagcgtaactgacttggcatttgca
catctcaaatccaaccaactagcctgtttggatgaagcaggtagcttatttgtctggcag
ctgtcaatgacaaatgggaagatccaagatgacattgttgtgcatatacgaagaccagaa
aacactatgctaagtaactttcgcagaattgtctggtgcccgtatattccagaagaaaat
gaagagaatgctgttgaggatacaaaccaaacaattgccttgttgcatgaggataaggct
gaagtgtgggatttggaaattgtacgtgcaaaccatagcacttggccagtagatgtcagt
gaaatcaaagaaggattcataattgtaaagggacattctgggcgtttgagtgaaggtgca
ctttcccctgatggaacagttatggccacagctagccatgatggctatgtgaagttctgg
caaatatacatagagggacaggatcaaccaaggtgtctccatgagtggaagcctcatgat
ggaagacctctgtcttgtctactgttttgtgacaatcataaaaaacaagacccagaggtt
cctttttggagatttttgatcacaggagcagatcaaaacagagagctgaaggtgtggtgc
acagtctcctggacaagtctgcaaacaatccaattttctccagacccatttagttctagt
gttttgcctgggcttaaagcatcgttggatttgtctgcggagttcctaatactgactgat
gttcagcggaaggttttgtatgtaatggaactgaagcaaaatcaggatgaaggaaaagca
acctttatatcgatttcagaattcctgctcactcacccagtccttagttttggtatacag
gatgtgaatcattgtcgtctccggaacactgaggtactcccatcagaagaagacaacaac
agtatcaaccaagaagagaccctggagtgtgaatcagttgagtctgcagctggtgtgctt
ataaaactgttttgtgtacatacgaaagcactgcaagatgtacagatctggtttcagccc
caacagaatgcagaacctgctatattggaaacagctcaaccaacacaagaagattatgcc
cttcctggtcatatgcaaggcatcaacacggagagaataccctccacaccaggatctatg
catggctcccagtcagagttgtgcaggatctctaccgacttcctactcctctctactgat
tctgttcccaaactgatgactccagatgcattcatgagtcctagtgtatcactgcagcag
ggtatttcctctcctgggagcatcataagcacacttacaacggttactcctattagtagt
acatcaaacagtgatacagtcctggccaggtcatccgaggagacacctttaagcacaatt
ttgcagttagatgccagtgtcacacttagtaacacgtcacgtgatggaaaccttcaatcc
agttctagaaatccagtcgttgtcatcccagtaaagtctgagacaattgttttgaaacca
gctgctcaggtggcactctccaaccatcctctagaactgaaagatttggatcctttggtt
gtaccacaaccctctcccacacgtgaacgttctcctgatgtcatatccagtgcatcaact
gccatacctcaggacattccagaaatagcttctgagacactacagcgtagttatatttct
tccgtaccatcgggcttttctgttgaaggatgtgactcctctcatcacactgacagcatg
agctctgctgcgtctgctttgcatttactttctccacataatctttcttctttagatcat
ggtcatagaccaatgattattggatcttcaatagtggataatgagcgaatcagtgctccg
tctttgctagagagcacaattcaagaagataatgtggatataggcttaccacagccttgg
cctgcagcacctgacattaccaaagagacaagaaataatttggtagacagttcaagaaat
ggtcaagacaggggagacaactcgtttcacagacataactaccacctactccaacagcat
gacagtcaagatgccaatgctgtacagagtgatcatgatgatgtggccagtttggcatcc
atttctggcagctttggaagcaagggtcaacatctccccatcaaggactggaagagcaaa
ttatcaccgcactcctctccaaaactaagtcggaaatcaaagaaagatgaaatggaactt
gcacaatctccccgaatttcagaccacctggtaaatttggagttacaagaagaattgcta
tgtatgttgcgcagccaacagaaagaattgtgtgaactacgtcagaatcagctggaactg
atgaagaaactgacagaccatatggatgctgtccagagctccattatgggacatgttgaa
cgtgtaattgatactcagcaagaagaggaacaaaggagagttgagcgaattttaagtgat
ggacacgaaaggaatggtcagctgcaggagtacctttcacaacaactttcccattcattg
tctggatctctttgcaaccgtctggataagatcataagggaagagatgaaaaagactgtt
tctcagtgtatttcaaagactttggacccagtaacagcacagttaactagcacagttgca
gcaaaaattactgctgtagaaggcgtactgaaggagaatgtcactaaaatggttaaatca
aaaaatgttactgatgcaattggtcgagtagctgcagattctcttcaagcagtgattcag
tctgcatacagagaagcttttcaaagtattgtacttcctgcctttgagaggagctgtcag
tccatgtttcagcaaataaacaatagtttcaagcaaggcacccaggaatatatgcaacag
ctggaagctcatctgagaagcagaaaaataaatgagcaggaaacacgtgaccctctggtt
acacagctccaacagatggtagattcccttcaaaccataacagacacgctggcttccaat
attactagcaatgtacggtctgaagttcaacaccagctacacattgcagtgggaaacatg
caggactctatcctatcacaggtacaaagagtcatcaaggaggaagtgagccatgctatg
aaagagcagcaagcagctgtcacatccagtattatgcaagctatgagatctgcagcagga
acacctgtcccgtcctcacatatggattttcactcccagcagacacacatcctgcagctt
atgcagcaaggtcaaatcaaccaggctttccagcaggcactgacagcctcagacctaaat
cttatcctttatgtttgtgagaccgtagacccacaacaagtatttgggcaacatccatgc
cctctcacacagcctgtcctcctgtccctaattcagcaactatcatttgacattggcagt
cgtactgaaattaagctcaattatgtggaagaagcagtgatgcatttagatcacagcgat
cctgtgactagagaccacatggggaccgttttaagtcaagtgcgtcagaaactttaccaa
ttcatgcaagctgaacctcagaatgctttacaaaagcctgctcgacgtctgttgataatg
ctacaaggactggcaactcctacactgagttag
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integrated database retrieval system
