Xenopus laevis (African clawed frog): 108715464
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Entry
108715464 CDS
T01010
Symbol
cnot1.S
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108715464 (cnot1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108715464 (cnot1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108715464 (cnot1.S)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108715464 (cnot1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108715464
NCBI-ProteinID:
XP_018116115
Xenbase:
XB-GENE-17345008
UniProt:
A0A8J0V6Y7
LinkDB
All DBs
Position
4S:complement(55713154..55777808)
Genome browser
AA seq
2416 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSHAIDNPLHYQKSLKPFPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSCELQGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEV
LHLLLSNLLFGQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
ADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNIIVQFGVREVTAVQVARVLGMMART
HSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVKELNPTLNFKEVTYE
LDNPSFQIRDNKALQTVVYGIQRGLGIEVFPVDLIYRPWKNAEGQLSFIQHLLLNPDVFC
FADYPCHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELGQYEQVKPLFAYPIKHC
PDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLVPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPIVAMASL
NIGGSAAPHTQSMPVFPPNLGSAFSTPQSPAKAFPPLTAPNQSTAFSGLGGLTSQLPGGL
GSGSLTGLGTGGLSLPTVNSDPFGQRKLSTSGLNQPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIAALDRFKNRLK
DYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALSQAQTPAKA
ASSIAVTSTTTTPAKTITITRPTGVSFKKDVPPSINTTNIDTLLVATDLAGQIVEPPENV
QEKIAFIFNNLSQSNMTQKVEELKETVKDDFMLWVSQYLVMKRVSIELNFHSLYSNFMDA
LKNLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMVTLAKNKPILHTAA
NVTNGSIYPSGKMEVKSALHREYSPSEDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESS
IRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLAMDINDLKPGSLLKDQ
DRLKSLDEQLSAPKKDVKQPEELPPMTSASEYAIRTAGKLWASVEKQESDAVFTATATAP
PPTTTCTATVPPQPQYSYHDIHVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAV
QELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPL
LMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDK
RLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPG
FLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCITELEQHLHAIPPALSINPQSQALR
SLLEAVAVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRA
YGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVA
FAMQLVKILLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLRSNFDAM
MERAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV
GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPSANPTMIRAKCYHNLDAFV
RLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLE
LNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKG
WPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDV
IPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDL
DSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMS
TITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCC
MGQKQAQQVMEGTGAS
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctaccttgtggacaatttg
acaaagaaaaactacagagccagccagctagaaatacaacatattgtgaaccggcacggt
cctgaggcagacaggcacttgttacgctgtctattctcacatgtggatttcagtggagat
ggtaaaagcagtggcaaggattttcatcagacacagtttttaattcaggagtgtgcatct
ctgatcaccaagccgaatttcatctctactctgtcacatgccattgacaatcctttgcac
taccagaagagtctgaagccttttccccatcttttcgcccagctaagtaaagttctgaag
cttagcaaggttcaagaggttatctttggccttgcccttcttaactcttctagctgtgag
cttcagggatttgctgcccagtttgtgaaacaaaaactcccagacctcctgcgttcttac
gttgacgtggacgttagtggcagtcaagaaggtggcttccaggacattgccatagaggtc
ctgcacctcctcctctccaacctcctttttggccagaaaggagcctttggggtgggacag
gagcagattgtagcatttcttaagactctacgcagagatttcccacaggaacgctgcccg
gtggtgcttgcaccactgctttatcctgaaaaacgggacattttaatggaccgaatctta
gctgattctggagggatcaccaaaactatgatggatagttctctggctgactttatgcag
gaagtgggctacagcttctgtgccagtgtggaagaatgtcgcaatataattgttcagttt
ggtgtccgagaagtcacagctgtacaagttgccagagtacttgggatgatggctcgaaca
cactctggtctaactgatggaattcctttacagtctatcacttcccctggtagtggaatt
tggagtgatgggaaggataaaaatgacgctgttcagccacacacctggaatgttgaagtt
ctgatagatgttgtgaaagagctgaaccccactctgaacttcaaagaggtaacctatgaa
ctcgataacccaagttttcagatccgtgacaataaagctcttcaaactgtggtatatggc
atccaaagaggccttggtatagaggtttttccagttgatctcatctataggccttggaaa
aatgcagagggacagctttcctttattcagcatttgttactgaaccctgatgttttttgc
tttgcggactacccttgccatgctgttgctactgatattttaaaggctccaccagaagat
gacaatcgtgaaattgctacatggaagagtttggatttgattgagtctctgcttcgactg
gctgagttgggacagtatgagcaagtaaaaccgctctttgcctacccaataaaacactgt
ccagatatgctagttttggcattactgcagattaataccacctggcataccttgcgccat
gaactcatctctacacttatgccaatattccttggcaaccaccccaactctgccatcatt
ttgcactatgcgtggcatgggcagggacagtccccatcgatacggcagcttatcatgcat
gcaatggcagagtggtacatgcgtggtgagcagtacgatcaagcaaggctctctcgtatt
cttgatgttgcacaggacttaaaggcattgtcaatgcttttaaatggtactccatttgcc
tttgttattgatcttgctgcacttgcctctcgccgggaatacctcaaacttgataaatgg
ctcaccgataaaatacgagaacatggggaaccattcatccaggcttgtatgaccttttta
aagagacggtgtccttctatactgggtggccttgtaccagagaaagatcagcctaaaagt
gctcaactgccacctgagactttggcaacaatgttggcatgtttacaagcttgtgctgga
agcgtttcacaagagctttcggaaaccatccttaccatggttgcaaactgcagtaatgtt
gttaacaaagcaagacagccacctcctggggttatgccaaaaggccgtcctcccagcact
agcagcttggatgcaatttcgcctgttcagattgatcctattgtggctatggcctctctc
aacattggtggatctgctgctcctcacactcaaagtatgccggttttccctccaaatttg
ggttctgctttcagtaccccgcagtctccagcaaaggcattccctccccttactgctcca
aaccagtccactgctttcagtggccttggtggattaacgtcacaacttccaggtggactt
ggatcgggaagcttgactggtttgggtacaggtgggcttagtcttcctacggtgaacagt
gatccctttgggcaaagaaaactgagtacatctggacttaaccagcctactttccagcag
acggacttatctcaggtgtggccagaagcaaaccagcactttagtaaagaaatagacgac
gaagcaaacagctacttccagcgcatctacaaccagcctccacaccccactatgtcggtg
gatgaggtgttggaaatgctgcagaggttcaaagattctaacataaaacgggaacgtgaa
gtattcaactgtatgctgaggaatttgtttgaagaatatcggtttttccctcagtaccca
gacaaagaactgcacataactgcttgcctttttggtggcatcattgaaaaggggctggta
acctacatggctcttggtttggcactacgatatgtacttgaagcactgcgtaaaccttat
caatccaaaatgtacttctttggcatagctgcactagatcgatttaaaaatagattgaaa
gattatcctcagtattgtcagcacttggcgtcgattagtcactttatgcaattcccccat
cacctgcaggagtatatagaatatggtcaacaatccagagatcccccggtaaagatgcag
ggctctatcacaaccccaggaagcattgcactctctcaagcacagactcctgcaaaagca
gctagcagcattgctgttacctctactactaccaccccagcaaaaaccatcactataact
agacctactggcgttagtttcaagaaggatgtaccaccttccatcaacactaccaatata
gacacactcttggttgccacagatcttgcaggccagattgttgaacctccagaaaatgtt
caggagaagattgctttcatatttaataatttgtctcagtccaatatgactcaaaaggta
gaggagctgaaagagactgtaaaggatgacttcatgctttgggtatctcagtatttagta
atgaaaagggtcagcattgagctcaacttccacagcttgtattccaactttatggatgcg
ctaaaaaacttggaattcaacaaaatggtgctagctgagacctacagaaatatcaaggtc
cttctgacctccgataaagctgctgcaaatttctctgatcgctctttgctgaagaacttg
ggacattggttaggcatggttactctggcaaagaacaagccaattctgcacacggcagca
aatgttaccaatgggtcaatatacccttccggcaagatggaagttaaaagcgctctccat
agggaatactccccttctgaggacttggatgtaaaatcattgctgctagaagcttatgtg
aagggacaacaggagcttctctacgttgtgccttttgttgccaaagtcttggagtctagc
attagaagtgtggttttccgaccaccaaatccttggacaatggcaataatgaatgtgtta
gcagagcttcatcaagaacatgacttgaagctaaatctgaaatttgagattgaagtcttg
tgtaaaaatctggccatggacataaatgacttgaagcctggcagcctactgaaagaccag
gatcgactgaaaagtttggatgaacaactttcagctcccaaaaaggatgtgaaacagccc
gaggaactacctccaatgactagtgccagcgagtatgccattcgaactgctggcaagctt
tgggcctccgtggaaaagcaggaatctgatgcagtttttacagcaacagctactgctcca
ccaccaaccacaacatgcactgcaactgttccacctcagcctcagtatagctaccatgac
attcatgtttactccttggcaggccttgctcctcatataacacttaatcccacaattcct
ttgtttcaagcccacccacagttgaagcagtgcgtacgacaagcaatagagagagcagtc
caggaacttgttcaccctgtagttgatcggtccattaagattgcaatgacaacctgtgag
cagattgtacgcaaagactttgcattagattctgaagagtctcgtatgagaattgctgct
catcatatgatgcgtaacctgactgctggtatggctatgattacatgccgtgagcctctg
ctcatgagtattgccaccaacctgaagaatagttttgcaacagctatgcgggctgcttcc
cctcagcagcgggaaatgatggagcaggctgctgcacagcttgctcaggacaactgtgaa
ttagcctgttgttttatacagaagactgcagtggaaaaggctggacctgaaatggacaag
agactggcaactgaatttgaactgcgaaagcatgcaagacaagaaggccgtcgttactgt
gatcctgtagtattaacataccaggcagaacgtatgccagagcagatacgtttgaaggtt
ggaggtgtggatcctaaacagctggctgtttatgaggaatttgcacgtaatgttcctgga
ttcctacccacgaatgacctaacccagcccacagggtttctggcgcaacctatgaagcaa
caagcctgggccacagatgacgttgcacagatttatgacaagtgcataacggagttagag
cagcatttacatgcaatcccacctgcactgtcgataaacccgcagtctcaagccctgcga
agtcttctggaagctgtagctgttgcccgaaattcaagggatgccatagctgcactagga
cttttacaaaaggctgttgaagggctgctagatgccacaagtggagcagatgcagacctt
cttctacgctatcgggaatgtcaccttctggtattaaaggctttgcaggatggacgtgct
tatggttctccttggtgcaacaagcaaataactaggtgtttaatagagtgccgagatgaa
tataaatataatgtggaagccgtagaacttctgatccgaaaccacctggtgaacatgcag
caatatgacctccatttggctcagtccatggagaatgggttgaactatatggctgtggcc
tttgcgatgcagttagttaagatactgcttgtggatgaacgaagtgtgagccatgtgaca
gaggctgaatttttccacactattgagactctgatgcgtattaatgcacactcaagaggc
aatgctcctgaaggacttccccagctaatggatgttcttcgctccaattttgatgcaatg
atggaacgggcccatgggggtcctaactttatgatgcactctggcatctcccaagcttca
gagtacgatgacccacccggcctgagggagaaggcagagtacctattaagagagtgggtt
aatctatatcattctgctgctgctggacgtgatagtaccaaagctttctctgcatttgtt
ggccaaatgcatcaacaagggattctgaagacagatgacctcatcacacggttctttcgc
ttgtgcacagagatgtgtgtggagataagttaccgggctcaagctgagcagcagcacaac
ccatctgctaatcccacaatgattcgggcaaaatgttaccacaatttagatgcttttgtg
cgtcttattgctctgctggtcaagcattctggagaagccacaaacacagttacaaaaata
aatcttttgaacaaggtacttggtattgttgttggagtacttctacaagaccacgaagtg
cgacaaagcgagtttcagcagttaccttaccatcgaattttcattatgttgttgttggag
ttaaatgcccctgagcatgttctagaaacaatcaattttcagacactgactgcattttgc
aatacttttcacattctcagaccaactaaagctccaggctttgtctatgcatggcttgaa
ctaatttcccatcgaatatttattgcccgaatgttggctcacacaccccaacaaaagggc
tggccaatgtatgcacagctgttaattgatctttttaagtacctggcaccttttttgagg
aacgtagaactgacaaaacctatgcagattctctacaagggcacccttcgtgtgcttctt
gttttgcttcatgactttccagagttcctttgtgattatcattatggtttttgtgatgtg
attccaccaaactgcatacagctgaggaatctaattctgagtgccttcccacgtaatatg
agactgccagatcccttcactcccaatcttaaggtggatatgttaagtgagataaacatt
gctccacgtatacttacaaatttcactggagtaatgcctccacagttcaaaaaggatttg
gactcttatctcaagactcgttcacctgttacatttctctctgagctccgcagcaacttg
caggtttcaaatgagcctggtaatcgctacaatatccagctgattaatgcattagtacta
tatgtggggactcaggctattgctcatattcacaataagggtagcacgccatccatgagc
accattacccactctgcacatatggacatcttccagaacctggctgtggacctagacact
gaaggacgctacctctttttgaatgctattgccaatcaactgcgatatcccaacagtcat
actcactactttagctgcacaatgctttatctatttgctgaagcaaacactgaggcgata
caggaacaaataacaagagttcttctagaaaggttgattgtaaatagaccacatccttgg
ggactccttataacattcatcgagcttattaaaaatcctgcattcaagttctggaaccat
gagtttgtacattgcgcaccggaaattgaaaagttgttccagtctgttgcccagtgctgc
atggggcaaaaacaggcccagcaagtcatggaaggcacaggagccagctaa
DBGET
integrated database retrieval system
