KEGG   Xenopus laevis (African clawed frog): 108715625
Entry
108715625         CDS       T01010                                 
Symbol
cop1.S
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04115  p53 signaling pathway
xla04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108715625 (cop1.S)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    108715625 (cop1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xla04121]
    108715625 (cop1.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108715625 (cop1.S)
Ubiquitin system [BR:xla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108715625 (cop1.S)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108715625 (cop1.S)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 zf-RING_UBOX Beta-prop_EML Beta-prop_DCAF4 zf-C3HC4_3 zf-RING_5 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WD40_RFWD3 RING_XB3-XBAT31 WD40_like zf-C3HC4_4 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_IFT140_1st zf-rbx1 WDR90_beta-prop_4th Beta-prop_WDR41 zf_C2H2_10 zf-RING_10 RING_ZNF598 DUF7708 Sina_RING zf-RING_11 zf-RING_4 Prok-RING_4
Other DBs
NCBI-GeneID: 108715625
NCBI-ProteinID: XP_018116435
Xenbase: XB-GENE-17338128
UniProt: A0A8J0V735
LinkDB
Position
4S:complement(78278587..78361984)
AA seq 682 aa
MSSSRQSQQLPGPGGGAGPSSSSAPSSSSSAGTLRSGLVSGSALSRLGTGGSGSALVGRP
GSSAGRKRPLPTPLCNGLINSYEDKSNDFVCPICFEMIEEAYMTKCGHSFCYKCIHQSLE
DNNRCPKCNYVVDNIDHLYPNFLVNELILKQKHRFDDKRLKLDPSNGHRWQIFQDLLGAD
QDNLDLANVNLMLQLLVQKKRQLEAESHAAQLQILMEFLIVARRNKREQLEQIQKELSVL
EEDIKRVEEMSGLYSPQSEDSTVPQFEAPSPSHSSLIDSTEYSQSPGFSGSSQTKKQPWY
NSTMASRRKRLTAHFEDLEQCYFSTRMARVSDDSRTASQLDEFQECLSKFTRYNSVRPLA
TLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTC
NSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLL
ASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTK
QPIMVFKGHRKAVSYAKFVNGDEIVSASTDSQLKLWNVSRPHCLRSFKGHINEKNFVGLA
SNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALP
GGESNVLIAANSQGTIKVLELV
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgtcctcaagccggcaatctcagcaactccccgggcccggaggtggagcgggcccctca
tcgtcctcagccccgtcttcgtcttcttcagcgggtacactgcggtctggactagttagt
ggctccgctctcagccgactcggaaccggaggcagtggatccgcgttagtgggcaggccg
ggaagctcagctggtaggaagaggcctttgcctacacctctgtgtaatggcctcattaac
tcatacgaggacaagagcaacgacttcgtgtgcccaatatgcttcgaaatgattgaggaa
gcatacatgactaaatgtggacacagtttctgctataagtgtatccatcaaagcctggag
gacaataaccgatgtccaaagtgtaactatgtggtagacaatatcgatcatctctatcct
aactttttagtaaatgagttaatcctcaaacagaagcacagatttgacgataagcgtttg
aagctggacccatcgaatgggcacaggtggcagatattccaggatttactaggggcagac
caagataatctggatttggccaatgtaaatctaatgctgcagctgcttgtccagaagaaa
aggcagctggaggccgaatcccatgctgctcagctacagatccttatggaatttctcatt
gttgctcgccgaaataaaagagagcaactggagcaaattcaaaaggaactcagcgtacta
gaagaggacataaagcgcgtggaggaaatgagtggcttatattcccctcagagtgaagat
agtactgtgccgcaatttgaagctccttctccttcacacagtagcctgattgactcaaca
gaatacagccaatctccaggattcagtggcagctcccagacaaaaaagcaaccatggtac
aacagcactatggcatcacgaagaaaacgtctcacagcccattttgaggacttggagcag
tgctacttttcaacaaggatggcacgtgtatcagatgacagtcgaacagcaagtcagtta
gatgaatttcaagaatgcctttccaagttcaccagatataattccgtgcgacctttagca
accctctcttatgccagtgatctctacaatggctctagcattgtgtccagtatagagttt
gaccgagactgtgactattttgccatcgctggtgtgacaaagaagataaaggtatacgag
tatggcactgttattcaggatgctgtggacatacactaccctgaaaatgaaatgacatgt
aattctaaaattagctgtataagctggagcagctaccacaagaacctcctggctagcagt
gattatgaaggtactgttatcttatgggatgggttcacaggacaaagatccaaggtgtat
caggaacatgagaaaaggtgttggagtgttgatttcaatcttatggatcccaaactcctg
gcctctggttcagatgatgccaaagtaaagctgtggtccacaaacttggataactctgtt
gcaagtattgaagccaaagcaaatgtatgctgtgttaaattcagcccctcctctcgctat
catctagccttcgggtgtgcagatcactgtgtccactattatgaccttcggaacactaag
cagcctattatggttttcaaagggcatcgcaaagcagtctcctatgccaagtttgtaaat
ggggatgagatagtctcagcgtcaacagatagtcagttgaaactgtggaatgtgtcacgg
ccgcattgccttcgatcatttaagggacatattaatgaaaaaaattttgttggcttggca
tctaatggagactacattgcttgtggaagtgaaaacaactccctctacctttattataag
ggcctttcaaaaacgttgttgactttcaaatttgacacggtcaagagtgttttagacaag
gataggaaagaagatgacaccaatgaatttgtaagcgctgtgtgctggcgtgcactccct
ggtggggagtcaaatgtacttattgctgctaacagtcaaggcacaatcaaggtactggaa
ctggtatga

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