Xenopus laevis (African clawed frog): 108716039
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Entry
108716039 CDS
T01010
Symbol
smarcb1.L
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
xla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108716039 (smarcb1.L)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108716039 (smarcb1.L)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xla01009
]
108716039 (smarcb1.L)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108716039 (smarcb1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108716039 (smarcb1.L)
Protein phosphatases and associated proteins [BR:
xla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108716039 (smarcb1.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108716039 (smarcb1.L)
SWI/SNF complex
108716039 (smarcb1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108716039 (smarcb1.L)
PBAF complex
108716039 (smarcb1.L)
SWI/SNF complex
108716039 (smarcb1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
108716039
NCBI-ProteinID:
XP_018117437
Xenbase:
XB-GENE-17346118
UniProt:
A0A1L8I0Q7
A0A974E219
LinkDB
All DBs
Position
1L:complement(166045791..166060953)
Genome browser
AA seq
378 aa
AA seq
DB search
MIMALSKTFGQKPVKFQLEEDGEYYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVDERK
KIVASSHGKKYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR
NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQAEVLV
PIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIES
YPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF
VTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD
QDRNTRRMRRLANTAPAW
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggcgttaagtaaaacgtttggtcaaaagccagtgaaatttcaattggaagag
gatggagaatattatatgataggatccgaggtgggaaattacttgcgcatgttcaggggc
tcattatataaacggtacccttccctttggagacgattggcaaccgtagacgagagaaag
aaaatagtagcgtcttctcatggaaagaaatatcatggctataccactttagccaccagt
gttactctcttaaaagcatcagaagttgaagagatccttgatggcaatgacgagaaatat
aaagcagtctccattagcacagagccaccaacctacctcagggaacagaaggcaaagaga
aatagccaatgggttccaaccctacccaacagctcccaccacttggatgcagtgccttgc
tctactactataaacaggaatcgtatgggcagagacaagaaaaggacatttccactctgc
tttgatgaccatgatccagccgtcattcacgaaaatgctgctcaagcagaagtactggtt
cccattagactagacatggaaattgatggacagaagcttcgagatgccttcacgtggaac
atgaatgagaagttgatgactccagaaatgtttgctgagattctctgtgatgaccttgac
ttgaatcctctggcttttgttcctgccatcgcttccgctatccgccagcaaatagaatct
tatccaacggacagcatcctggaagatcagtctgaccagagagtcatcatcaagctcaat
atccatgttggaaacatttcattggtagaccagtttgagtgggacatgtccgaaaaagaa
aactctcctgagaaatttgctctaaagttatgctcagaacttggactcggtggggagttt
gttacaactattgcttacagtattcgagggcagctcagctggcatcaaaagacatatgca
tttagtgaaaacccattgccgacagtagagattgctattcgaaatacaggtgatgctgac
caatggtgccccctcctagagaccctcactgatgccgaaatggagaagaagatccgggac
caggaccggaacaccaggcgtatgagacgtcttgccaacactgcaccggcctggtaa
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