Xenopus laevis (African clawed frog): 108716412
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Entry
108716412 CDS
T01010
Symbol
sptbn1.L
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04517
IgSF CAM signaling
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108716412 (sptbn1.L)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108716412 (sptbn1.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xla04812
]
108716412 (sptbn1.L)
Cytoskeleton proteins [BR:
xla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108716412 (sptbn1.L)
Intermediate filaments
Intermediate filament-binding proteins
108716412 (sptbn1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
HTH_40
Motif
Other DBs
NCBI-GeneID:
108716412
NCBI-ProteinID:
XP_018118008
Xenbase:
XB-GENE-17346827
UniProt:
A0A1L8G5Y2
A0A974CT89
LinkDB
All DBs
Position
5L:complement(3056545..3196761)
Genome browser
AA seq
2357 aa
AA seq
DB search
MTAVTADYDNCDIQQQYSDTVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLSRVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLILGLIWTIILRFQIQDISVETEDNKEKKSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNVHYNLQNAFNLA
EQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVLAV
VAVARELEAENYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQKVFQEMLYIM
DWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVRAVNASAQRFAAGGEGY
KPCDPQVIRDRVSHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSDDYGKDLTSVIRLFSKHKAFEDEMSGRSGHLLQTIKEGEEMIAEDHFGSEKIRERIQD
IQEQWANLEQLSAIRKKLLEDTSSFYQFQADADYIDAWMLDILKIVSSSDVGHDEYSTQS
LVKKHKDVAEEIASYRPTIDALHEQAAALPEERFNSTDVQNRLSGIEERYKELAELAKLR
KQALQDALALYKMLSEADACELWIVEKEQWLNNIQIPEKLEDLEVIQHRFESFEPEMNNQ
ASRVAVVNQIARQLVHSGHPSEKEIKAQQDKLNTRWSQFRELVDRTKDALSSALSIQNYH
LECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEAKLTDLQKEAEK
LEAEHPDQAQAILDRLAEINNVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSRT
QTAIASEDMPNTLTEAEKLLTQHENIKNEINNYEEDYQKMRDMGELVTQGQTDAQYMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPNNL
EAAEAAIKKQEDFMTTMDASEEKINAVVDTGRRLVHDENINSDKIEEKVDSIDSRHKKNR
AAANDLLMRLKDNREMQKFHQDCQELSLWINEKMLTARDMSYDEARNLHSKWLKHQAFMA
ELASNKEWLDKIEKEGNQLIAEKPETEAVVREKMSSLHEMWEELETTTQTKAQRLFDANK
AELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMDVRKKEVEELRS
QAQALSQEGKSTDEVDGQRQVVEVRFVELLAPLNERKKYLLASKEIHQFIRDVEDEILWV
EERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQHRNDDIFERSKNILEDGSLNTEA
ITQRLSDLQALWHQLMEETEKRHRRLEEAHRAQQYYFDGAEAEAWMSEQELYMMSEEKAK
DEQSAVSMLKKHQIVEQAVEDYAETVHQLSKTSRALVAEGHPESERISMRQSQVDKLYAG
LKDLSEERRGKLDERQRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGHIGQERVDSVNHMADDLINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDAKEIFCRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAARLQAAYAGDKADDIQKRESEVLEAWKALLDACDGRRLHLVDTGDKFRFFSLVRD
LMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARNH
YASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLMGQEPYLSS
REIGMSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRLQEEEERKRKPPT
PELSPKLSEDGSPQQWDGTKDGEQISQNGLPSDQESPRMVDNADANEMVNGSTEQRSSSK
ESSPIPSPTADRKSKSSLQTAATLPAKTQEIPSGQFEGFLHRKHEWEGHNKKASSRSWHN
VYCVITNQELGFYKDSKNAASNIAYHNEFPVNVKEAVCEVAIDYKKKKHVFKLKLTDGNE
YLFQAKDDEEMNSWIEAITKAMTWDKSEVSVSTQSTPASSRAHTLPASVTVTDSPGKREK
DKEKDKEKRFSLFGKKK
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgtcacagcagactacgacaactgtgatatacaacagcaatacagtgataca
gtcaacaatcgctgggacgacgagtgggacaatgagaacagctctgcccgtctgtttgag
agatcccgcatcaaggccttagcagatgagcgtgaagcggtgcagaagaagactttcact
aaatgggtcaattcccacttatcccgggtgtcgtgccgcatcactgatctctacacagac
cttcgagatgggagaatgctcatcaaactactggaggttctctccggagaaagactcccc
aagcccaccaaggggagaatgcgtatccactgcctggaaaacgttgataaagctctccag
ttccttaaggaacagcgggtgcatctggagaacatgggctcccatgatattgtggatgga
aatcacaggctgatccttggtcttatttggaccataattctccgattccagatccaagat
atcagtgtggaaactgaggacaacaaagagaagaaatctgctaaggacgcgctgcttctg
tggtgccagatgaagacagctggatatccaaatgtgaacatccataactttacaactagc
tggagggacggcatggcatttaatgctcttattcacaaacacagacctgatctcattgat
tttgacaagctgaagaaatcaaatgttcactacaatctccaaaatgcttttaacctggca
gagcagcaccttggccttacaaagcttctggaccccgaggatatcagtgtggaccaccct
gatgagaagtccatcattacctatgttgtaacatattaccactacttctccaagatgaaa
gctctggctgtggaaggcaaacgtataggaaaagtgctggacaacgccattgaaaccgag
aaaatgatcgagaaatacgaatctctggcctccgacctcctggagtggattgagcagacc
atcatcatcctgaacaatcgcaaatttgccaattctttggttggtgtacagcagcaattg
caggcgttcaacacttatcgtactgtggagaaaccccccaaatttacagagaaaggaaat
ttggaagtcttgctcttcaccattcagagtaaaatgagggcgaataaccagaaagtgtac
atgccaagagagggcaaactcatctccgatattaacaaggcctgggaaagactggaaaaa
gcggaacacgagagagaactggccctgcgcactgagctcatccgacaggagaaactggaa
caacttgcgcggagatttgatcgcaaggccgccatgagagagacctggctcagcgaaaac
cagcgcttggtgtctcaggataattttggtttcgacctccccgctgtggaagccgctaca
aagaagcacgaggccattgaaacggacattgcagcctatgaggagcgtgtgttggctgtg
gtggcagtcgctagggaactggaagcggaaaactaccatgatatcaagcgaatcaccgcc
agaaaggataatgtcattcgcctgtgggagtatctgctggagcttctcaaggctcgacga
caacgtcttgaaatgaacctcggcctccaaaaggttttccaggaaatgctctacataatg
gactggatggacgaaatgaaggtgcttttattgtctcaagattacgggaagcatttgctg
ggggtggaggacctgttgcagaaacatgccttggtggaggctgacattgccattcaagca
gatcgggtcagagccgtcaatgcttctgctcagagatttgccgctggaggagaaggttat
aaaccatgcgaccctcaagttattcgggatcgtgtgtcccacatggagttctgctaccag
gagttgtgtcagctagctgcagagagacgggctcgtctagaggaatctaggcgcctctgg
aagtttttctgggaaatggcagaagaagagggatggattcgtgagaaggagcagattctg
tcctctgacgactatggaaaggatttgacaagtgttatccgtctgtttagcaaacacaaa
gcttttgaggatgagatgagcggccgaagtggacaccttcttcaaacaattaaagaggga
gaggagatgattgctgaagaccattttggttctgagaaaatacgagagagaatccaggat
attcaggagcagtgggcgaatctggaacagttgtctgcaattagaaagaagcttctggaa
gacacatccagtttctatcagttccaggcagatgctgattacattgatgcatggatgtta
gacatcctgaagattgtatctagtagtgatgtggggcacgatgagtattctacccagtcc
ttggttaaaaagcacaaggacgttgctgaagaaattgcaagttaccgaccaactattgat
gctcttcatgagcaagctgctgccctccccgaggagcgatttaattctacagatgtgcag
aacagattgtctggcatagaagagagatataaggaattggctgaactagcaaagcttcgc
aaacaggctctgcaagatgcccttgcgctctacaaaatgttaagtgaagctgatgcctgc
gagctctggatcgtcgagaaggagcaatggctgaacaacatacaaatccctgaaaaacta
gaagatcttgaagttattcaacacagatttgaaagttttgagccggaaatgaacaaccaa
gcttctcgggtggctgtggtgaaccaaattgcccgtcagcttgtccacagtggtcaccca
agtgagaaggaaatcaaagcgcagcaggataaactcaacacaaggtggagccagtttagg
gagctcgttgacagaacaaaggatgcactcagttctgcactcagcattcagaactatcac
cttgagtgcaatgagacaaagtcctggattagagaaaagaccaaagtcattgagtccaca
caagagcttggtaatgacctggccggagttatggctctgcagaggaaattaactggcatg
gaacgggatctggccgccattgaggcaaaactgactgatcttcaaaaagaggcagaaaaa
ctggaagctgagcatcccgaccaagctcaggctatcctggacagacttgctgaaattaac
aacgtgtgggaagaaatgaaaacaacactgaagaatcgggaagagtctcttggagaagcc
agcaagctgcagcagttcttgcgtgacttagatgacttccagtcttggctttccaggacc
cagacggctattgcatcagaggacatgccaaacacgctaacggaggccgaaaagcttctt
actcagcatgaaaacatcaagaatgaaatcaacaactatgaggaagactatcagaagatg
agggatatgggtgagctggtgacacagggacaaacagatgcacagtacatgttcctgcgc
caacgcctccaggctcttgataccggatggaatgagcttcacaagatgtgggaaaacaga
cagaacctcctgtctcagtctcacgcttatcagcttttcctaagagatacaaagcaagct
gaagcttttctcaataaccaggaatatgtcttggcacatacagaaatgcccaacaacttg
gaagctgcagaggcggctataaagaagcaggaagacttcatgactactatggatgcaagc
gaggagaagatcaacgcagtggtggacactggaagaaggctggtccatgatgaaaacatc
aattctgataagattgaagagaaggtggattcaatagacagcaggcacaagaagaatcgt
gcagcggcgaatgatctattaatgcgcctgaaagacaacagagagatgcagaagttccac
caggactgccaagagctgtctttgtggattaatgagaagatgctcacagctcgcgatatg
tcttacgacgaggcccgaaacctgcacagtaagtggctgaaacatcaggctttcatggcc
gaactggcatccaataaggagtggttggacaaaatagaaaaggaggggaaccagctcatt
gcagagaaaccagaaacagaagctgttgtaagagagaagatgagctctttgcatgaaatg
tgggaagagcttgaaaccaccacacagaccaaagcacagcgtctttttgatgccaacaaa
gcggagctttttacccagagctgcgccgatctggataagtggctgcacggcctggagagt
cagatccagtcggatgattatgggaaagatctgaccagcgtcaacattcttctgaagaaa
caacagatgctggagaaccagatggatgtgaggaagaaggaggtggaggagctgcggagt
caggcccaggcgctaagtcaggaggggaagagtacggatgaggttgatggtcagcgacag
gttgtggaagtgagatttgtggaactgctcgcacccctgaatgaaaggaaaaagtacctg
ttggcttccaaggagatccatcagttcatccgggacgtggaggacgagattctttgggtt
gaagagcgaatgcccctcgccacatccacagaccatgggcacaacctccagactgtgcag
ctgctgataaagaaaaaccagactcttcagaaggagatccagggacaccagcaccgcaat
gacgacatatttgagaggagtaagaatatcctagaagacggcagcctgaacacagaggca
atcacacaaagactgtcagacttgcaggctctgtggcaccagttaatggaagagacagag
aagcgtcaccggaggctggaggaggctcacagggcacagcagtattactttgatggagcc
gaggctgaagcctggatgagtgaacaagagctgtatatgatgtcagaggagaaggccaag
gatgagcagagcgcagtgtctatgctgaaaaagcaccagattgtggaacaagccgtggag
gattatgcagagaccgtgcaccagctctccaaaaccagcagagctttggttgcagaaggt
catccagagagcgagcgcatcagcatgcgtcagtctcaggttgataaactttatgccggc
ctcaaagatctgtcggaagagcggagaggcaaactggacgagaggcagcggctgttccag
ctcaatcgggaagttgatgacttggagcagtggatcgctgagagagaggtggtggcggga
tctcacgagcttggccaagactatgaacatgtaacgatgttacaagagcggtttagagaa
tttgcccgggacacaggccatattggacaggagagagtggactcggtcaatcacatggca
gatgatctgattaattctggccattctgatgcagccaccattgcagaatggaaagacgga
ctcaacgaggcatgggccgaccttctggagctcatcgacacaagaacccagatactggcg
gcctcttatgaactgcacaagttctaccacgatgctaaagagatcttctgccgcatacaa
gacaaacacaagaagctcccagaggagttgggcagagatcagaacacggtagagacgtta
cagaggatgcatacgacgtttgaacacgacattcaggcactggggacacaggtgaggcaa
cttcaggaagatgctgcccgactgcaggctgcttatgccggagacaaagctgatgatatc
cagaagagagagagtgaggttctggaggcatggaaagcattgctggacgcatgtgatggc
cgaaggctccatttggtggacacaggggacaagttccgcttcttcagcctagtgcgggat
ctcatgttatggatggaagacgtgatccgacagattgaggcccaagagaagccacgggat
gtttcctccgtagaattactgatgaataatcaccagggaatcaaggcagagattgacgcc
cgcaacgacagctttactacgtgtattgagctgggcaagtccctcttggcaagaaatcat
tatgcatcagaagagattaaggagaagctgctgcagctgactgagaagaggaaagagatg
attgacaagtgggaagaccgatgggaatggctgcgactcattctggaggtgcatcagttt
tcccgagacgccagtgttgcggaggcctggctgatgggacaagagccgtatctatcaagt
cgggagatcgggatgagcgtcgatgaagtggaaaaactcattaagagacatgaagccttt
gagaaatcggcagctacttgggatgaaaggttttctgctctggaaagactcactacgttg
gaactgttggaagtccgacggctgcaggaggaagaggagaggaagaggaagcctccgact
cctgagctcagtccaaagctttcagaggacggatccccacaacaatgggatggaacaaaa
gatggagaacaaatatctcagaatggattgccgtctgaccaggagtcgccacggatggtg
gacaatgcagatgccaatgaaatggttaacgggtccacagagcagagatcaagctccaaa
gagtccagtccaattccctcaccgactgccgatcggaaatccaaatccagcttgcagact
gcggccaccctcccggccaagacgcaggaaatcccttccggccaattcgaaggtttcttg
catcgcaaacatgaatgggagggtcacaacaagaaagcgtcaagcagatcttggcataac
gtgtactgtgtgatcaccaaccaggaattgggattttataaggattccaaaaacgctgca
tcaaatattgcgtatcacaacgagtttccggtgaatgtgaaggaagccgtctgtgaagtg
gcaatagactacaagaagaagaaacatgtattcaaattaaaacttaccgacggcaatgag
tacctcttccaagccaaagacgatgaggaaatgaacagctggattgaggccatcacaaag
gcaatgacgtgggataaaagtgaggtgtcggtgagcacccagagcaccccagcatccagc
cgcgcccacaccctcccggccagcgtcacggtaaccgacagccccggcaaacgggaaaaa
gataaagaaaaggacaaagaaaagagattcagcctgtttggcaaaaagaaatga
DBGET
integrated database retrieval system
