Xenopus laevis (African clawed frog): 108716708
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Entry
108716708 CDS
T01010
Symbol
arid1b.L
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108716708 (arid1b.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108716708 (arid1b.L)
03021 Transcription machinery [BR:
xla03021
]
108716708 (arid1b.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108716708 (arid1b.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Helix-turn-helix
ARID
108716708 (arid1b.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108716708 (arid1b.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108716708 (arid1b.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108716708
NCBI-ProteinID:
XP_018118571
Xenbase:
XB-GENE-17342734
UniProt:
A0A8J0VAI4
LinkDB
All DBs
Position
5L:53389968..53619223
Genome browser
AA seq
2410 aa
AA seq
DB search
MIMAAQVVSAAAAPPATNANNKGKSQGLPGLNQDLTSGGSGPVPGSVSGLGDGAAANSST
NNNNGDHLHHHHSLLHHHHLHHHHHHHEVSIATGTSLSSANANNTNNNNSSSDGGLKEGR
NSTVSSHYHSVDMGGGVPNYKLKGSSGSGGDYLAPITHPLHPPHHHAHHPQQHPSHHAPQ
HLQQHPPYHPNHPHPPQQLNQLQPQQLSGTIQQPSPNKSSPGEGSSSEASDMENQQQQQQ
QHGGVGEEGSNSSAAAGKDVALGNQGDSQPRRATKTDEDDMQQGKMRVGEPASGQYEHTV
LGGGQGNGSSNNTTSNNNIGGSGGSSSSSTSSSSSSVSEFNSYYGSASTSRAGPCFDQHG
RQQSPGIGMMHSVTAAPNSIMEPIQNSHEGFGSSHYEQHYQGSYSRAVAAGGGIGAYGSS
AAGYGVLLSPRQSSSVTSGSSILMGGGGTSHGKAPGASNAGGFQRYQGQNPHPSGATPTL
NQLLTSPSPMMRSYGGTYPDFGNSGGPQQQSGSNQGSQPPMGMGKDMGSQYGAANTAWGA
QQRSHPAMSPGSTGQNSNRPQGSPMDPMTMKRPQIYGMGNTPYSQTQQSSPFPGQAYGPP
GPQRYPIGIQGRTQGAIGGMQYPQQQMPPQYGQQGVSGYCQQGQQPNYNQQSQPQYPQPQ
AQYLSQAQQRYPPQQDVSQEGYGNRPQPPSIAPGKNNNEDMNQMQQERPSSLPDLSGSID
DLPTGTEATLSSAVSASGSTSSQGEQSNPAQSPFSPHASPHLPSLQGGGPSPSPVGSPVG
SNQSRSGPISPASIPGSQMPPQPPGSQSESSSLPALSQSPMPQDRGFIAAVQRNNQIPQY
GAQHTGSPMSPNPPTPGGQMHPGMGSFHQSNSSGSCGPQMGQYGPQGNYSRSPSYTGVPN
TNYSGPGPGMTMNANSQIHGQGPSGSMSMGRMPGSAIQNRVFVTNMGNMPPNSSSMSQQG
TPGMGPPMPSVNRKAQEAAAAVMQAAANSAQNRPPYIRSPAYPSQSGAGGRPMFSSQHPN
YGNTQVSMMHQTDQYGQSGYPGMNQSGLIGSNSPYNQSMSNSSGMVNSQPSPYNMMNSST
GHLGLVDMINTGESKMASSLKFDGKADSPAPPETKSKDSYNSQGNSQPPTPGLLTVPSPF
SPSSASISSFHGDESDSISSPGWPKTPSSPKASSTTTGEKITKLYELGNEPERKMWLDRY
LTFMEERGTPVATVPAVGKKCLDLVRLYFCVKEIGGLAQVNKNKKWRELATNLNVGTSSS
AASSLKKQYIQYLFAFECKIERGEEPPPEIFNPGESKKQPKIQPPSPANSGSFQGPHTPQ
STGSNSMAEMPLELKPPTPASTPHTQLQPMPGGRNSAVSVQDPFCDTTDSSFQKRNSMTP
NAPYQQGMNVPDMMGRMPYEPNKDPFGGMRKVSGSSEHFMAPGQMPSSNMQDMYNQTPSG
VMSNMGMSQRQQFSYGPGGYDRRSEYGMGAEGDMGPPGQNNMAPSNTDPGMYSPNRYHGQ
QRNEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKRHMDSMYVPQAKRHEGDMYNMQY
GSQQQDMYNQYGNSYSGQERRPMQGQYPYPYNRERMQGPGQMQQHSMGSQLTGGSMQSSA
SESAPQNMWTSRNDIPYSYQVRQGPASTTQTGSYSAMNRSDDMMGPDQRMNHDNQWSSHG
NQRQPSYMSPTAAMQPITRAPPSSYQTPPSMPNHISRAPSPASFQRSLENRMSPNKSPFL
PSMKMQKALPTTTASQNTMTSAQVPMRREISFPPGSVEATQAILKPRRKLTSKDIVTPEA
WRVMMSLKSGLLAESTWALDTINILLYDDSTVTTFNLSQLPGFLELLVEYFRKCIIDIFG
ILKEYEVGEPVQIAISPSTEDTHSAMEEDVLLEYSDTEEEDEDEYDKEEEDNLKIEDKVL
SHPNSESPTDTSERPKQASKFDKLPIKVVKKSNLFVIDRSDRLGHVQEFNSGLLHWQLGG
GDTTEHIQTHFESKMEIPSHKRTSQSSNSPINKKKGHEGKVVAEYEEQTDKSITATIDDV
LSARPGALPEDSNSYFLQTESGKLLLGIHKAKQHRNITLLEDEPRSRDETALCTIAEWKD
SLAKRCICVSNIIRSLSFVPGNDTEMSKHPGLVLILGKLIRLHHDHPERKRAPQTYEKDD
EEDKGVSCTKDEWWWDCLEILRENTLVTLANISGQLDLSVYTESICLPILDGLLHWMVCP
SAEAQDPFPTVGPISVLSPQRLVLETLCKLSIQDNNVDLILATSPFSRQEKLYATLVRFI
GDRKNPVCREMSVALLSNLAQGDTLVARAIAVQKGSIANLISFLEDGATMAQYQQSQHNL
MHMQPPHLEPPSVDMMCRAAKGLLAMAKVEENQSEFLLQEGRLLDISISAVLNSVVASVI
CDVLFQIGQL
NT seq
7233 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggcagcgcaagtggtttcagctgcagcagcccctccagccaccaatgcgaac
aataaggggaaaagccagggtcttcctgggctcaatcaggacttgaccagcgggggatct
gggccagttcctggatctgtgtctggattgggagatggagcagcagccaacagcagcacg
aacaacaataatggggatcatctccaccaccaccacagtcttctgcaccaccaccatcta
catcatcatcaccatcatcatgaagtaagcatagccactggaacatcactgtcctctgcc
aatgctaataacaccaacaacaataacagcagttcagatgggggacttaaggaaggcagg
aattctacagtgtcatcccattatcatagtgtggatatgggtggtggggtcccaaattac
aagcttaaaggtagtagtggaagtggtggggactatcttgcacccattactcacccactt
caccctcctcatcaccatgcccaccacccccaacagcacccatcccaccatgcaccccag
catctgcaacagcaccctccctaccaccctaaccatccacatccaccccagcaactaaat
caactgcagcctcagcagctatcagggaccatccagcaaccaagcccaaataagagcagc
cctggagaaggcagcagcagcgaggcgtcagacatggaaaatcagcagcagcagcaacaa
caacatggtggtgtaggggaagagggctccaacagctctgctgcagcagggaaggatgtg
gctttgggcaatcagggggactcccagcctaggagggctacgaagacagacgaggacgat
atgcagcaggggaaaatgagagttggggagccagcgagcggccagtatgagcatacagtg
ctggggggagggcaaggaaacggcagcagcaataatactacttctaataataatattggt
ggcagtgggggatcttcatcttcttccacatcctcctcttcttcctcagtgtccgaattt
aatagttattatggtagtgcaagtacaagcagagcagggccttgctttgatcaacatggc
agacaacaaagccctggaattgggatgatgcactctgtaacagcggcccccaacagcatt
atggagcccattcagaactcccacgaagggttcggcagtagtcactatgagcagcactac
cagggatcgtacagtagggccgttgcggcaggaggggggataggagcatatggcagctca
gcggctggatatggggtactcctctccccaaggcagagcagcagtgtaacatcgggcagc
agcattttgatggggggagggggtaccagccatggcaaagcaccaggtgcctccaatgca
gggggcttccagcggtaccaaggacagaacccacacccttcaggagctacccctacactt
aatcagcttctaacctcacccagccccatgatgaggagctacgggggtacttaccctgat
tttgggaactctggtggtccacaacagcagagtggaagtaaccaggggagtcagccgcct
atgggaatgggcaaggacatgggctcccagtatggagcagcaaatactgcttggggagca
caacaaagaagtcatccggcaatgagtcctggcagcactgggcagaacagcaacagaccc
cagggtagcccaatggatcccatgacaatgaagagacctcagatttatggaatgggcaat
acaccttattcacaaacacaacagagcagtcctttccctggccaagcatatggccctcca
ggcccacagaggtatccaattggaattcaaggacgtacccaaggtgctataggaggaatg
cagtatccacaacagcagatgccgcctcagtacggtcagcaaggtgtaagtggctactgc
caacaaggccaacagccaaattacaaccagcagtcgcagcctcagtatccgcagcctcag
gctcagtacctgtcacaagctcagcagcggtatccaccccaacaggatgtttctcaagaa
ggttatgggaacagaccccagcctccttcaatagccccaggaaaaaataacaatgaagac
atgaatcaaatgcagcaagaaaggccatcaagcttgccagacttatctggctccattgac
gacttgccaacagggacagaagcaacgctaagctcagcagtcagcgcttctggttctaca
agcagccagggggaacagagcaatcctgcgcagtcacccttttcgccccatgcctcacca
catctcccaagccttcagggtggggggccatcaccatcccctgtgggttcacctgttggg
agcaaccaatcacgatccggtccaatatcccctgctagtatacccggaagccaaatgccc
ccacagcctccaggtagccaatcagaatccagttcacttcctgcattgagccagtcacca
atgccacaggatcggggctttatagctgctgtacaaaggaacaatcaaataccccagtat
ggagctcagcatacagggtcacctatgtctcctaatcctcctactcctggaggccaaatg
catcctggtatgggcagctttcaccagagcaactcaagtggcagctgtgggcctcagatg
ggtcaatatggaccacaaggcaattattcaaggtcgccatcatacactggagtcccaaac
acaaactacagtggtcctggcccaggtatgacaatgaatgccaacagccagatacatgga
caagggccaagtggatctatgagtatgggcaggatgcctgggagtgcaatacagaacagg
gtgtttgtcacgaatatgggtaacatgccccccaactcttccagcatgtcacagcaagga
actccagggatgggaccacctatgccatctgtgaatcgtaaggcacaagaagcagctgca
gctgtgatgcaggctgctgcaaattctgcccaaaacaggccaccatacattaggtcgcct
gcttatcccagccagtctggggctggcggacgccccatgttttcttcacagcatcccaac
tatggcaacactcaagtttccatgatgcatcagactgatcagtacgggcaaagcggttat
cctggcatgaaccaaagtgggcttatagggtcaaattctccatataaccaatcaatgagt
aatagttctggcatggtgaattcccaaccatccccatataatatgatgaacagttccaca
ggtcatcttggtcttgtagacatgataaatactggagaatccaagatggcatcatctctc
aaatttgatggtaaagcagattcacctgctccacccgaaactaagtcaaaggatagctac
aattcacagggtaattctcagcccccaaccccaggtctcctgacagtcccttccccattt
tccccaagctctgctagcatctcctcctttcatggagatgaaagtgatagcattagcagt
ccaggctggccaaagactccatcaagccctaaagcaagttcaacaaccactggagaaaaa
atcacaaaactttatgaattaggaaatgagccagaaaggaagatgtggctggatcggtac
ttgaccttcatggaagaacgaggcacgccagttgcaactgtacctgcagttggaaaaaag
tgtcttgaccttgtcaggctctacttctgtgttaaagagattggtggtttagctcaggtt
aataaaaacaagaagtggcgagagctggcaaccaatctaaatgttggcacctctagcagt
gcagccagctccttgaaaaagcagtatatacagtatctgtttgcctttgaatgcaagatc
gagagaggggaggagcctcctccagagattttcaatccaggagagtcaaagaagcagcct
aagattcagccgccatctcctgctaactcaggttcgtttcaaggtcctcatacaccccag
tccactggcagcaactccatggcagagatgccacttgaactaaagcctccaacacctgcc
tctactccacacacccaactgcagcctatgccagggggaaggaatagtgctgtgagtgta
caggaccccttttgtgatacaactgattcatcttttcaaaagcgtaattccatgacccct
aatgccccctaccagcaaggcatgaatgtaccagacatgatgggaagaatgccatatgag
cccaacaaagatccatttggcggaatgaggaaagtatctggaagcagtgagcattttatg
gctcctggccagatgcccagcagcaacatgcaggatatgtacaaccagactccctctgga
gttatgtccaatatggggatgagtcagcggcaacaattctcctatggacctggaggctat
gacaggagatctgaatatggaatgggggctgaaggggatatggggccaccaggtcagaac
aacatggcaccttcgaacactgatccgggcatgtattccccaaatcgctatcatggacag
caaagaaatgaaccatatggacagcagtatccaggacaaggaccaccttctggccaacca
ccatatggaggacaccagccaggaatgtatccccagcaacagaactacaagagacatatg
gatagcatgtatgttcctcaagccaaacgtcatgaaggagatatgtacaatatgcagtat
ggcagccagcaacaagatatgtataatcagtatggaaattcatattctggccaagaaagg
cgacccatgcaagggcagtatccatatccctacaatagagagaggatgcaaggtccagga
caaatgcagcaacacagcatggggtctcagcttacgggaggatccatgcagtcatcagca
agtgaaagtgctccacaaaatatgtggacatcaagaaatgatataccttattcatatcaa
gttagacaaggccctgcaagcacaacacagacagggtcatactcagccatgaatcgatct
gatgatatgatgggacctgaccaaagaatgaatcatgacaaccagtggtcatcccatggc
aatcaacgtcagccttcctatatgtctcccacagcagccatgcagccaatcaccagagct
cctccatcatcttatcagacccctccgtcaatgccaaatcatatttctagagctcccagc
ccagcatcttttcagcgctcactggagaatcgtatgtcccctaacaagtctccatttctg
ccttccatgaagatgcagaaggctttgccaactaccacggcatcacaaaacaccatgact
tctgctcaggttccaatgaggcgagaaattagttttcctccaggatcagtggaggccact
caggcaatcttgaaaccaagaagaaaactaacttcaaaagatatcgtaacacctgaggct
tggagagtgatgatgtcactaaagtctggtctgttggctgaaagtacgtgggctttagat
actatcaacatcctgctatatgatgacagcactgtcaccacatttaacctgtctcagctg
cctggatttttggaactcttggtggaatattttagaaaatgcataattgacatcttcgga
atactgaaggaatatgaagtaggtgaaccagttcagatagctatttcgccgagcacagaa
gatactcattctgcgatggaggaagatgttttgcttgaatattcagatacagaggaggaa
gatgaggatgagtatgataaagaagaagaagataacctcaaaatagaagataaggtctta
tcccacccaaattctgaatcacccactgataccagtgaaagacccaaacaagctagtaaa
tttgacaaattgccaattaaagttgtgaaaaagagcaatctttttgtcattgatagatct
gacaggcttggccatgtacaggaatttaatagcggcctgcttcattggcaacttggtggg
ggtgatacaactgagcacattcaaacccactttgaaagcaaaatggaaatacccagtcat
aagaggacttcacagtcaagtaattccccaatcaataagaaaaaaggccatgagggcaaa
gttgtagcagaatatgaagaacaaacagataaaagcataacagcaaccattgatgatgtt
ctttctgcaaggccaggggcactacctgaagattccaacagttattttttacagacagaa
agtggcaagcttctcttaggaattcataaagccaaacaacataggaatattacattatta
gaagatgaaccaagaagcagagatgaaactgccttgtgtacaatagcggaatggaaagac
tctttggccaaacgctgtatatgtgtttcaaacattatccgtagtttatcatttgtgcct
ggtaatgacacagagatgtcaaaacacccaggtttggtgttgatccttgggaagctaata
cgtcttcaccatgatcatccagagagaaagcgtgctccacaaacatatgagaaagatgac
gaagaagacaaaggggtatcgtgtaccaaggatgagtggtggtgggattgtctcgagatt
ctgagggaaaatactttggtcacattagccaatatctctggacagctagatttgtctgtt
tacacagaaagtatctgtttgccaattttagatggcttgctacactggatggtgtgtcca
tctgcagaggcacaggatccttttcccactgtggggcccatttctgtcctttcccctcaa
agacttgtgctggaaacattgtgtaaacttagtatacaggacaataatgtggaccttata
ttagctacttctccattcagccgacaagagaaattgtatgcaactcttgtcaggtttatt
ggggatcgcaaaaacccagtttgtcgagaaatgtctgtggcgctgctgtcaaaccttgct
cagggggacacgttggtagcaagggccatagctgttcagaaaggaagcattgcgaactta
ataagcttcctggaagatggagccactatggcccaataccaacagagtcagcataacctc
atgcacatgcagcctccacatctggagccacctagcgtggatatgatgtgtagagctgcc
aagggtttactggccatggccaaagtggaggaaaatcaatctgaattccttttacaggaa
ggccgactgctagatatatctatatcagctgttctgaactctgttgttgcctctgttatt
tgtgatgtactctttcaaatagggcagttatga
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integrated database retrieval system
