KEGG   Xenopus laevis (African clawed frog): 108716821
Entry
108716821         CDS       T01010                                 
Symbol
hdac2.L
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03082  ATP-dependent chromatin remodeling
xla03083  Polycomb repressive complex
xla04110  Cell cycle
xla04330  Notch signaling pathway
xla04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108716821 (hdac2.L)
   03083 Polycomb repressive complex
    108716821 (hdac2.L)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    108716821 (hdac2.L)
   04350 TGF-beta signaling pathway
    108716821 (hdac2.L)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    108716821 (hdac2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    108716821 (hdac2.L)
Enzymes [BR:xla01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108716821 (hdac2.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108716821 (hdac2.L)
   HDAC complexes
    Sin3A-HDAC complex
     108716821 (hdac2.L)
    BRAF-HDAC complex
     108716821 (hdac2.L)
    REST complex
     108716821 (hdac2.L)
    SHIP complex
     108716821 (hdac2.L)
    MiDAC complex
     108716821 (hdac2.L)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108716821 (hdac2.L)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108716821 (hdac2.L)
  Chromatin remodeling factors
   NuRD complex
    108716821 (hdac2.L)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108716821
NCBI-ProteinID: XP_018118778
Xenbase: XB-GENE-17337963
UniProt: A0A1L8G8Y0 A0A974HJP6
LinkDB
Position
5L:79187084..79211111
AA seq 488 aa
MAYTQGGAKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
IFKPIIAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPMLMLG
GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEAEDPDKRISIRASDKRIACDEE
FSDSEDEGEGGRRNVADHKKGAKKARLEEDKKETDDKKSDVKEEDKPKDNIAEKMDTKGV
KSEQPSNP
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggcgtacactcaggggggtgccaagaagaaggtctgttactattatgatggggatatt
ggaaattactactatggccaagggcatccaatgaagcctcacagaatccgcatgacccat
aatttgctgctgaactatggcctttatagaaaaatggaaatttatagacctcacaaggca
acagctgaagaaatgaccaagtatcacagtgatgaatatataaaatttcttcggtcaatt
cgaccagacaatatgtctgaatatagcaagcaaatgcagaggtttaatgtaggcgaagac
tgtcccgtgtttgatggcctctttgagttttgtcaattgtctactggtggatctgtagct
ggtgctgtaaaactcaaccgccaacaaacagatatggctgttaactgggcaggaggcctt
catcatgctaagaaatcagaagcatctggattctgttatgtgaatgatattgttcttgca
atccttgaacttctgaagtatcatcaaagagtgttatatattgatattgatatccatcat
ggtgatggtgttgaagaggcattttataccactgatcgtgtcatgacagtgtcatttcac
aaatatggcgaatacttccctggcaccggagatcttcgagatattggtgctggaaaaggt
aaatattatgctgtcaattttccaatgagggatgggattgatgatgagtcttatggacaa
atctttaaaccgataattgctaaagtaatggagatgtatcagcctagtgctgttgttctg
cagtgtggtgcagactctctttctggtgaccgacttggatgcttcaatctgactgttaaa
ggtcatgcaaaatgtgtggaagtggtaaagacgtttaatttgcctatgttgatgcttggg
ggaggtggctatacaatacgtaatgttgctcgatgctggacatatgagactgctgttgca
ctggactgtgaaatcccaaatgaattaccatacaatgattactttgaatattttggacct
gacttcaagttgcatattagcccttctaacatgacaaatcaaaatactcctgagtatatg
gagaaaataaagcagcgtttatttgaaaacttgcgtatgctgcctcatgctcctggagta
cagatgcaggctattccagaggatgctgtacaggaggacagtggtgatgaggaagcagaa
gatccagacaaacgcatttcaatacgagcttctgacaagcggatagcttgtgatgaggag
ttttcagactcggaggatgaaggtgaaggaggaagacgtaatgtagcagatcacaaaaag
ggagcaaaaaaagcaagacttgaagaagacaaaaaggagacagatgacaagaagtctgat
gttaaagaagaggataaacccaaggacaacattgcagagaagatggacacaaaaggtgtt
aagtccgaacagccaagtaatccgtga

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