Xenopus laevis (African clawed frog): 108717000
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Entry
108717000 CDS
T01010
Symbol
usp13.L
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xla01002
]
108717000 (usp13.L)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108717000 (usp13.L)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108717000 (usp13.L)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108717000 (usp13.L)
Peptidases and inhibitors [BR:
xla01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108717000 (usp13.L)
Ubiquitin system [BR:
xla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108717000 (usp13.L)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108717000 (usp13.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
UBA
zf-UBP_var
zf-UBP
UCH_1
UBA_9
UBA_4
Motif
Other DBs
NCBI-GeneID:
108717000
NCBI-ProteinID:
XP_018119165
Xenbase:
XB-GENE-17344338
UniProt:
A0A974CXY3
A0A1L8GA59
LinkDB
All DBs
Position
5L:complement(115693712..115750294)
Genome browser
AA seq
844 aa
AA seq
DB search
MAEDLGELLVPYMPTIRVPKSGDRVYKTECAFSYDSPESDGGLYVCMSTHLGFGREHVER
HYRKTGQSVYMHLKRHIRPKATGAAGGAFPKRINGRLFLELENNTDMNSEDYEYEDEAKL
VIFPDHFEIALPNIEELPALVTIACDAVLNSKSPYRKLDQESWEEELQVSKFANNLVQID
NGVRIPPSGWKCAKCNLRENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHKQMGYPLAVR
LGSITPDGADVYSFDEEEAVLDPHLAKHLAHFGIDMLQMQGSENGVLDNDVKPRVNEWEV
IQETGLKLKPMFGSGYTGIKNLGNSSYLTTVMQVIFSIPEFQRAYVGNLTRIFDYAPLDP
TQDFSTQMAKLGHGLLSGLFSKPPMKSELIEQVMKEEHKPQLKGINTRMFKALVSKSHAE
FSSNRQQDAEEFFIHFVNLVERNSIGSENPSDVFRFLVEERTQCCQSRKVRYTQRVDYIM
QLPVPMETATNKEELIAYDLKRREAESAKRPPPELVRAKIPFSACLQAFSEPENVPDFWS
SALQAKSAGVKTSRFSSFPEYLVVQIKKFTFGLDWVPKKLDVTIDMPDLLDINHLRATGL
KSGEEELPDIAPPIIIPDDHRDLSRNDFMEPPDIDESSVMQLAEMGFPLEACRKAVYYTG
SMGAEVAFNWIIAHMEEPDFAEPLTIPGCGTVASTSSHGQNALLNQPPEEIVALICSMGF
PRNHAIQALRATNNNLERALDWMFSHPECEEEADNVSGCVDTENNPNGIITDSEQDGPRI
KDGNGRYELFGIISHAGTSTMSGHYVCHIKKEGRWVIYNDHKVSSSERPPKDLGYLYFYH
RISC
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagacctgggagagctgctggtcccttacatgcccaccatcagggttcccaag
tcaggggacagggtctacaaaacggagtgcgccttctcttatgactctcctgagtctgat
ggaggtctgtatgtgtgcatgagcacacacctgggatttggcagagaacatgtggagcga
cattataggaaaactgggcagtcagtctacatgcatctaaagcgccacatcagaccgaaa
gcaaccggagcagcaggaggtgcctttccaaaaagaataaatgggagactatttttagaa
ctagaaaacaacaccgatatgaactctgaagattatgaatacgaagatgaagcaaaactt
gttatatttccagatcattttgaaattgccttgccaaatatagaggaactacctgcattg
gtaacaatagcctgtgacgcagtccttaattcaaagtctccatatagaaaacttgatcaa
gaatcatgggaagaagagcttcaggtttcaaagtttgcaaacaaccttgtgcaaatagac
aatggtgtgaggattccaccaagtggctggaagtgtgccaagtgtaatctcagagagaac
ctgtggttaaatctgacagatggctccattatgtgtggaaggtggttctgttcaggcagt
ggtgggaatgggcatgctcttgaacaccacaagcaaatgggctaccctttggcagtaaga
ctaggaagcattaccccagatggggcagatgtgtattcatttgatgaagaggaagcagtt
ctagatccccacctggccaagcaccttgcacattttggcattgatatgctgcagatgcag
gggagtgagaatggtgtcctggacaatgatgtcaaaccaagagtaaatgagtgggaagtt
atccaagaaactggattaaagctaaagccaatgtttggctcaggctacactggcatcaaa
aaccttgggaacagctcctacctcaccacagtgatgcaagtcatcttcagcatccctgag
tttcagagagcatatgtgggaaaccttacacgaatatttgattatgcacctctggatcca
acacaggatttcagcacacagatggctaaacttggccatggtctgctgtcagggctgttc
tccaaacctccaatgaaatctgagctaattgagcaggtgatgaaagaagaacacaagcct
caactgaaaggcattaacactcgaatgtttaaagcgctagtgagcaaaagccatgcagaa
ttttcttcaaaccgacaacaagatgcagaagaatttttcatacattttgtaaacctggta
gagagaaatagtattggctcagagaacccaagcgatgtcttcaggtttttggtggaggaa
aggacacagtgctgccagtcaaggaaagtacgttatacacagagagttgactatatcatg
cagctaccagtgcccatggaaactgctacaaataaagaggaactgattgcatatgacctg
aaaagaagagaagcagagagtgcaaagaggcctccaccagagctggtccgtgccaagatc
ccattcagtgcctgcttacaggccttttcagagcctgaaaatgtgcctgacttctggagc
agtgctcttcaagccaagtctgcgggtgttaagacatctcgcttttcttcattccctgaa
tacctggtagtccagataaagaagtttacatttggccttgattgggtgcccaagaaactc
gatgtgactatagacatgccagatcttctggacatcaaccatctcagagctacagggctc
aaatcaggagaagaagaacttccagatattgctcctcctattatcattcctgatgatcat
agagatctttccaggaacgactttatggaacctcctgacatagatgaatcttcagtgatg
cagctggcagagatgggctttcctctagaagcctgccggaaagcagtgtattacacaggg
agcatgggggcagaagtggcatttaactggattattgcgcacatggaagaaccagatttt
gcagaaccgttgaccattcctggttgtggaacagtggcctccacatcatctcatgggcag
aatgcactattaaaccagcccccagaagagattgtagcacttatttgctctatgggtttc
ccaagaaatcacgctatccaggcactaagagcaacaaacaataatcttgaaagagctctg
gactggatgttctctcacccggagtgtgaagaagaggctgataatgtctctggctgtgtt
gatactgagaacaatcccaatggcattatcacagacagtgaacaggatggccctagaata
aaggatggcaatggaagatatgaactctttgggataatcagccatgctggaacatctaca
atgtcaggacattacgtctgtcatatcaaaaaggaaggaagatgggtgatttataatgac
cataaagtttcttcatcagagcgaccaccaaaggacttgggctacctttacttctatcat
agaatctcatgttaa
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