Xenopus laevis (African clawed frog): 108717243
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Entry
108717243 CDS
T01010
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xla03037
]
108717243
04812 Cytoskeleton proteins [BR:
xla04812
]
108717243
Cilium and associated proteins [BR:
xla03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108717243
Cytoskeleton proteins [BR:
xla04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
108717243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
DCX2_DCDC1
Motif
Other DBs
NCBI-GeneID:
108717243
NCBI-ProteinID:
XP_018119596
UniProt:
A0A8J0VCN6
LinkDB
All DBs
Position
5L:162925811..162958148
Genome browser
AA seq
1999 aa
AA seq
DB search
MDSPTGDGYMDTAPSPEQTLPIVPRGHQVTKVAPAKKITFYKSGDPQFGGVKMAINHRSF
KSFSALMDDLSNRVPLPFGVRTITTPRGTHSVNRLEQLVDGGSYICSDKKYVQPIAPSKP
GHKMAVQRPGPPASARKQSRQDEHEDEYTATHFQQVPRVRKKITLVKNGDPTVRRSIILN
RTNGRNLKTFLEEASDLLQYTVRRIYTVDGRKIESIQAVSQVPSLLICVGREPFKPIHLE
NARKSVAEKLPGLRSHPAVTSASMDNRKNANFGLKAKKSVIHPRTASSGKTRFSLSSEKS
YPNDLNMSPMNSGYASSSKACPHTKSEDSSHSLVNEDIEKRVHVNKDGSLSVEMKVRFRL
LNEETLQWSTQIKKSSNAGKAKCEQLSLCDEDETMTRKGLNPELFSETDESFYPCDGESY
SSKPNYEELEDVCCAHCGLQCQEYDIWKNPMHVNQPQDYTSRGAWQTRSSVSSSSSHKRV
ICNQKTSIDSLHRTSSEEYTEHIVHRSSHYSETKEHGETRVTYSAVSQCTNCSGQSTAAS
NREINTEIGRKSTGERQRKSRSSSKTENSLLNETVLEDFKESVNMTSHSASIEEWSELSP
TPSSSHEINNKNCSQRISVLSQSPVRSSRSSHRKVKNRVSAETICGQSNLSLKMVERQES
PSMSTPTNLLSISNVYNNCEEMCLSSSTAQLIECHRTSNDEIDSGQENGPVQHSARISLS
DCEKCSTKSSCHSTHKKKRVSKNTSNKIDPPRSPCSSINPKENVSIHVHANNIPDQCEVA
SELQESCSSIRSETHEVKLQSQTSFQSVSSWTDSTSCHGQEGQPTTKIPVCDDNCSLGKP
GDDNMSGPEEDRNTSLINKSRSSSISHSASSRHNVRYPNSGKSCSANSRVSSTCDKESKC
KDSTDNSSANDRESQVSQQNTKQYIQNGNVSNKGSDCEHNTGFRPTPPKDKPNQRQRRSS
ALKYSCSSEYSDPAKIMNGENPVCSRSTSPASQGILADKVSKERKSSMKSNNSAEETSVC
KKRKDSSSSSKRMFKKESLDSELHPSALPNVTSEEVVHEWLRKIPSRTIDVDYEVEECST
KISEETQTEDLQPETDKSAEEGDAEKDVVKEIQESCQVHKETTDEENCTNDINNIQDTNT
CDEEQKEDILLPNRIKGNDDNSVITAVPLCDKIFPSTIHNSVQIMKALLRPLKESKFDRS
NSLPEVSPSMGKRLSNSAKVLISCLASLQLLDEGTTDCMEESNISNKPKYNELLNILQDL
WTKAPENKCLKNAKSGKQLSREDEVTPVSSSGVDVNSGYDGSGDGSITGGGDSTGIAEKA
DESKLSVTPSDNKTNDCQFTEITETTSGNLELENGQCAEKDTPALVRGPSAGLDEANTHL
VDENMNEKMVEDNKSNMAESESTNDADNTNNVNEEITENMECMEQSNDTMNILSQTENSP
ESNESNTEECNGISSQSDVQSTIISTSDSNGKKDLEAQKQLNETDPIWALKLLRKIETEF
MAHYVDAMNEFKVRWNLEDDENLEGMIAELKNDVGQRIQKSITNEFKKIKSKAGQRMPRP
PGDHSSLRSSLQAEERRQRLQTMHKRSAMQLANGDKNKDLGTNDTSCETDEENLTFSASL
GNDANGLTDYDEFCPCETCIKKKRALKLAQPKVVISDAPITRAFDLQQILKMKKDNNLQL
EECNSAKEEAVNENACSGGNENGSDEEGNKNGSGKEDSSSRLEKQDTNLSLSLSNDEKEA
DDINEGSSIVVENGECNDVPDADKGLDDETNNNERLDNETENEACSGTEHAICKPMSREN
SAKSESNEVSEEEQQSEQEHNNSDINEDDIDSAPAAEQEETKENLEDTSETEETEGTCLE
EGSGHEKDEEEISVSSAEENCHLGILENGFNLQKSHMGQVSLITHQGSVDNPDEVANSTA
ETSPNSDLDSPDSKKTQMYPDSSSEEDNVSSGGTSPVDGDKNGTIEKGNVNLQGRTEESL
NNLAKTTKEDIISEDEFDF
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atggacagtcccacaggagatggctatatggataccgcccctagtcctgagcagaccctc
cctattgtccccagaggccatcaggtgaccaaagtggccccagccaagaagataacattt
tataagagcggagaccctcagtttggtggagtcaaaatggctatcaaccatcgtagtttt
aaaagcttcagcgctctcatggatgatctctccaatcgtgtccctttgccatttggtgtt
aggaccataacaactcctcgtgggactcacagtgttaacagactggaacagctggtagat
ggtgggagctatatatgttctgataagaaatatgttcagcccattgctcccagcaagcca
ggacacaagatggctgtacagcggcctggtcccccagccagtgcccgaaaacagagtaga
caagatgagcatgaggatgaatatactgcaacacacttccagcaagttcccagggtacgc
aagaaaatcactcttgtgaagaatggagacccaacagttaggcgttctattattctaaac
cgcaccaacgggcgaaacctaaaaacattccttgaggaagcatcggatctcttgcaatat
actgtacgaagaatttacactgtagatggaagaaagattgaaagcatccaagccgtgtca
caggtcccgagcctcctcatctgtgtgggacgggaacccttcaaaccaattcatctggaa
aatgccaggaaaagtgttgctgaaaagcttcctggcctccgatctcatccggcggttaca
agcgcgagcatggacaataggaagaatgcaaactttggcctgaaagctaaaaaaagtgtt
atccatccaaggactgcgtccagtggaaagaccaggttttctttgtcatctgagaagtcc
tacccaaatgatctcaacatgtccccaatgaatagcggttatgcatcttcctccaaggcg
tgcccgcatacaaaatcagaagacagttctcattccttggtcaatgaggatattgaaaaa
agagttcatgtcaataaggacggtagcctctcagtagagatgaaggtacgttttcgcttg
ttaaatgaagaaacgcttcagtggtcaacacagataaaaaaatctagcaatgcgggtaag
gccaaatgcgaacaacttagcttatgtgatgaggatgaaacaatgaccaggaaaggtttg
aacccagaacttttttcagaaacagatgaatcattttacccctgtgatggtgagtcatat
agctcaaaacccaattatgaagaacttgaagatgtctgctgtgcccattgcggattgcaa
tgccaagaatatgatatctggaaaaaccctatgcatgtcaaccaacctcaagactatacc
agcaggggtgcctggcagactcgatcttcagtctccagctcctcttcacataagagagta
atatgcaatcaaaagacatctatagacagccttcataggacttcttcagaagagtataca
gaacacattgtgcacaggtcttcgcattattcagaaactaaagaacacggagagactagg
gtgacatactctgcagtaagtcaatgcaccaactgcagtggacaatctactgctgcttca
aacagggaaattaacacagaaattggacgtaaaagcacaggggagagacaaagaaagtca
cggtctagttcaaaaactgaaaattcgttgctaaatgaaactgttttggaggattttaaa
gagtctgttaatatgacaagccacagtgccagtattgaagagtggagtgagctatcccca
acaccatcttccagccatgagataaataataaaaactgtagccaaagaattagtgtactt
tcccaatctccagttcggtctagtagaagtagtcataggaaagtgaagaatagagtgagt
gctgaaacaatttgtggccaatcaaatttaagcctaaagatggtagaaaggcaagagagt
cctagtatgtctacaccaacaaaccttcttagcatctcaaatgtatataacaattgtgag
gaaatgtgcttaagcagttccacagctcagctcattgaatgccacagaactagcaatgat
gaaatagacagtggtcaggagaatggacctgttcagcactctgcaagaataagtctcagt
gactgtgaaaagtgttcaacgaagtcttcgtgccactccactcataagaaaaagagagtt
agcaaaaacactagtaacaaaatagatcctcccaggtccccttgctcttcgattaatcca
aaggaaaatgtcagtattcatgtgcatgctaataatatccctgaccaatgtgaggtggcc
tcagagctgcaagaatcttgttcttctatcagatcagaaacacatgaagtcaaactccag
tctcaaacatcatttcagtctgtttcctcttggactgattctacgtcttgtcatggtcaa
gaaggacaaccaactacaaagatccctgtttgcgatgataactgttcattaggtaaacca
ggagatgacaatatgtcaggaccagaagaagacagaaataccagtctaattaataaatca
cggtcatcaagcatatcacactcagccagctctagacataatgtcagatatcccaattct
ggaaaatcttgtagtgccaattcaagggtctcttcaacctgtgataaagaaagtaagtgt
aaagactccaccgacaatagttcagccaatgatagagagagtcaagtatctcagcagaat
acaaaacaatacatccaaaatggaaatgtttctaataaaggatcagactgtgaacataac
actggttttaggcctaccccaccaaaagataagccaaaccaaaggcaacggagatcgtca
gctttgaaatattcctgtagtagcgaatacagtgacccagcaaagattatgaatggtgaa
aatcctgtttgctcaaggtctacttccccagcatcacagggtattttggcagataaagtt
agcaaggagagaaaaagttcaatgaagagtaacaacagtgctgaggaaacatcagtttgt
aaaaaaagaaaagatagttctagttcttcaaagagaatgttcaaaaaggaatctttagat
tctgagctccatccttctgcattgccaaatgtaacctcagaagaagttgtccatgagtgg
cttaggaaaatcccctctcggacaatagatgttgattatgaagtggaagaatgttcaaca
aaaataagtgaggagacccaaaccgaagatctgcagccagaaactgataaatcagcagaa
gaaggggatgcagaaaaagatgttgtgaaagagattcaagaaagctgccaagttcacaaa
gaaacaacagatgaagaaaattgcactaatgatataaataatatacaagatacaaataca
tgcgatgaagagcaaaaagaagacattttattaccaaataggatcaaaggcaatgatgac
aacagtgtaataacagcagtacctctctgtgataaaatattcccaagtactatacataat
tctgtgcaaataatgaaggcactgttaagacctttaaaggaatccaagtttgaccgttca
aatagtttacctgaagtatcaccttctatgggaaaaagactaagtaactccgcaaaagtt
ctgatctcttgtcttgccagtctgcaacttctggatgaaggcacaacagactgcatggaa
gaatcaaacatttcaaataaaccaaaatataatgagttgttgaatatattacaggatcta
tggactaaagcaccagaaaacaaatgtttaaagaatgcaaaatctggaaagcagctttcc
agggaggatgaagtaactcctgtttcatcttctggagttgatgtcaacagcggatatgat
ggctctggtgatggtagtattacaggtggtggagactctacaggtatagctgaaaaggct
gatgaaagtaaattgtctgtaactcccagtgacaacaaaactaacgattgtcaatttaca
gaaataactgaaacaacatctggaaatttagaactagaaaatggacaatgtgctgaaaag
gatacaccagccctggttagaggaccatctgctggtcttgatgaggccaatacacacctt
gtagatgaaaatatgaatgagaaaatggtagaagacaataaaagtaacatggctgaaagt
gagtcaacaaatgatgccgataacacaaataatgtaaatgaagaaataacagaaaatatg
gagtgcatggaacaaagtaatgacaccatgaacattcttagtcaaactgaaaacagccca
gaatccaatgagtccaacacagaggaatgtaatgggataagttcacaaagtgatgtccaa
tccaccattatttccacttctgattcaaatggtaaaaaagacttagaagcccaaaaacaa
ttaaatgagacagatcccatctgggcactaaaactgctgagaaaaatagagactgaattc
atggcccattatgttgatgcaatgaatgaattcaaggttaggtggaacttagaagatgat
gaaaatcttgagggaatgattgctgagcttaaaaatgacgtaggtcaaagaattcagaaa
agtattacaaatgaatttaaaaaaataaaaagtaaggccggacagaggatgccaaggcct
ccaggtgaccattcaagtctgagatcttctcttcaagcagaggaaagaaggcaacgcttg
caaacaatgcacaaaaggtcagccatgcagcttgccaatggggacaaaaataaggatctt
gggacaaatgatacttcatgtgaaactgatgaagaaaacctaacttttagtgcatcacta
ggcaatgatgccaatggacttacagactatgatgaattctgtccatgtgaaacgtgtatt
aaaaagaagagagctttaaaattagcacagcctaaagtggtgatatctgatgcccccatc
acccgagcttttgaccttcagcagattctaaagatgaagaaggataacaatctacaactg
gaagaatgcaatagtgcaaaagaggaagcggtcaatgaaaatgcttgttctggtggcaat
gaaaatggctctgatgaagagggaaacaaaaatggttcaggaaaagaggactcctctagt
agattagaaaaacaagatacaaacctaagtttaagtctttctaacgatgaaaaggaggct
gatgacattaatgaaggatcatccattgtggtggagaatggagagtgcaatgatgtccct
gatgctgataaaggcctagatgatgaaactaacaataatgaacgtttggacaatgagaca
gaaaatgaggcatgttctgggactgaacatgccatctgtaaacccatgagcagggaaaat
tcagcaaaaagtgagagcaatgaagtcagtgaagaggagcagcaaagtgaacaggaacac
aataattcagatataaatgaagatgacattgattcagcaccagcagctgaacaggaagag
acaaaggagaatttagaagatacaagcgagacagaagaaacagaaggaacttgcctagaa
gaaggttcaggccatgagaaagatgaagaagaaatatctgtgagtagtgctgaagaaaat
tgccatctgggaatcttggagaatggcttcaatttacagaagtctcacatgggtcaggtc
tctctcataacacaccagggctctgttgataatccagatgaagttgctaatagcacagca
gagacatcccctaacagtgatttagacagtccagacagcaagaaaacacagatgtaccca
gatagttcttctgaggaggataatgtgtcctcagggggtacaagccctgttgatggggat
aaaaatggaactattgagaagggaaatgtgaaccttcaaggaagaacagaagaaagtcta
aataatctggcaaagacaacaaaggaagacattatcagtgaagatgaatttgacttttag
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