Xenopus laevis (African clawed frog): 108717723
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Entry
108717723 CDS
T01010
Symbol
trerf1.S
Name
(RefSeq) transcriptional-regulating factor 1 isoform X1
KO
K26583
transcriptional-regulating factor 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108717723 (trerf1.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
MiDAC complex
108717723 (trerf1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_6
ELM2
zf-C2H2
zf-C2H2_4
Myb_DNA-binding
Myb_DNA-bind_6
zf-C2HE
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
108717723
NCBI-ProteinID:
XP_018120500
Xenbase:
XB-GENE-6489233
UniProt:
A0A974CSM3
A0A1L8G1D3
LinkDB
All DBs
Position
5S:complement(17751863..17835199)
Genome browser
AA seq
1145 aa
AA seq
DB search
MEDHQLFKGNLAIGNNENLYFQQLQNEANSQSLDHSYDSLDTNASESSSSSPHLSHESRN
LALPAVTKSVRPVDAASPAHWTYSASGNHIQGRIIHNLNSYDQNLSWNSQTQNEIVDSFQ
LPCFDQLNENRTKMTSGALHKLDSFTKVFARQNLRNPSASQGLHEQPSLMDSDSALRQLL
SVKLGAEQSSLTATMDRYQQTQPNLPNTPQKHQMQAMQHPQQHFFYEYPQHVSQLQSESL
MQQGQQYLQQIQSHQLLPQQAQQSHYYIQDAQSGQQRASSQEMQQQRQFSGQVPQYYHSQ
AARPELHHTMQSLHHHMQMQPASYHRDCNQKTEYYQQDQTQTMQLIQLGSVPQYAYQHSQ
PFRHTYKQNLVPQQQSLHQDSSQQKSYESQSQVVMESAVGFTNVDTVDNYNNHDVDGIGN
TVSQHAALPQDSSFMVNSRGPHPSSTAAWPQVLSDVTLPTVSPDHRGLYSEREDSKNRLT
CSMCFKEFKSLPALNGHLRSHGGVRHSNLKQEEGDEQQASEMDSVPPIVMPVSVPVTLSM
SEPSLQTSCKEEKVQPESCASDDDMPVLTRMSSSPPSSPKAVSSCASSEIISKLHQSRSK
SGNSDSLKPQQEKRKYRHRPEPLFIPPPSFIGNSFYSGATLYQSQLRSPRVLGENLLAGV
QELPTYTPPPMLSPVRQGSGLFSSVITAIHNTHLPLTPLTPSPRVLLGRPYSIDAGSTTV
TPGPGEQTVDVEPRINIGSRFQADIPELQGPSSLEKETDNATLVWTPLPDLENRESQQRV
DIFLSMSCSSVLPGGGTNLEYALHLLYECKGNITRALETLLLRNPHRLHNHPLANYHYAG
SDKWNATEKKNFNKAVNTCNKDFFHVQKMIKSKTVSQCVEYYYTWKKILHLGRRHRTRLA
EVNEDGMTSADDDVDENEGLEDKIYESGCDLMAKSPDLRHATDLPRPAGAYSVSPIGSFV
CEMGNCGAIFSSRQALNGHARIHGGTSAPSKVFPVPGSTRTKSNIQSGYCSVKSSPAHSN
TSGETDTSTIFPCKVCGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKADVAAKMADTIART
IVRTTVSAEHILPFDHLSLVKSMEQDFDNDVAQDLEDVLEDTDIIHADLLLDDEDTDLLQ
DGAVL
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcatcagctgttcaagggcaaccttgcaattggcaataacgaaaatttgtac
tttcaacaattacaaaatgaagcaaacagccaatctctagaccacagctacgattcactg
gacaccaatgcttcagagtcttcttcatcatctcctcatttatcccatgagtctagaaat
cttgctttgccggcagttactaaaagtgtcagacctgtggacgcagccagtccggcacat
tggacgtattctgcgtctggcaaccatatccaggggagaataattcataatttaaatagc
tacgaccaaaacttgtcatggaattcgcagacacaaaatgaaatcgtagactctttccag
ctgccatgttttgatcaactcaacgaaaatagaacgaaaatgaccagtggtgctttacac
aaactcgactcgtttacaaaggtatttgcgcggcagaatttaagaaatccttccgcatct
cagggacttcatgaacagccatctctaatggatagtgacagtgcactaaggcagctgctt
tctgtcaaactaggggctgagcagtcatcccttacagcaaccatggacaggtaccaacaa
acgcaaccaaacctcccaaatacaccacagaagcatcaaatgcaagcgatgcagcaccca
cagcagcattttttctatgaatacccacagcatgtaagccagttgcagtcagagtcttta
atgcaacaaggccaacagtatttgcaacaaattcagtctcatcagttgttaccgcagcaa
gcgcaacaatctcattattacatccaagatgctcagtcaggccagcagcgtgcatcatct
caggaaatgcagcaacaacgtcagttctcaggtcaagtgcctcagtattaccattcgcag
gctgcaaggccagagctgcatcacacaatgcaatcactgcatcatcatatgcaaatgcaa
cctgcctcctatcacagggattgcaatcaaaagactgagtattaccagcaggatcaaaca
caaaccatgcagctcattcagctgggatcagtgccacaatatgcttatcagcactcgcag
ccctttaggcacacgtacaagcagaacctggtgccacagcagcaatctctgcaccaagac
tcaagccagcagaaatcatacgaaagccaatctcaagttgtcatggaaagcgcagtggga
tttacaaatgtagacaccgtagataattataacaatcatgatgtggatggtattggaaac
actgtatctcagcatgctgccctgccacaggactcttcatttatggtgaatagcagagga
ccacatccatcttcaactgctgcctggcctcaggttctctctgatgtcactcttcccacg
gtttcaccagatcacagaggattgtattccgaaagagaagactccaaaaaccgactcaca
tgctccatgtgctttaaggaattcaaaagccttccggcactgaatggccacttgaggtca
catggtggggtgagacactcaaacctaaaacaagaggaaggagacgagcagcaggcgagc
gagatggatagcgttcccccaattgttatgcctgtttctgtgcctgtaacgctttccatg
tctgagcctagtctgcaaaccagctgcaaagaggaaaaagtccagcccgagagctgtgcg
tcggatgatgacatgccagtccttacgaggatgtcctcctccccgccgtcctcaccaaaa
gcggtcagctcatgcgcatcttctgaaattattagtaagcttcaccaaagcagatcgaaa
tctggcaactcagacagcctcaaacctcagcaggaaaagagaaagtaccggcatcgacca
gaaccactgttcatccctcctccttccttcatcggcaattcattttattctggtgccacc
ttgtaccaaagtcagctgcgctctccccgtgtcctgggggagaatttactagctggagtt
caggagttacctacatacacgccacctccgatgctgagccccgtgcgccaaggatcaggc
ctgttcagcagtgttatcacagctatacacaacacacaccttccactgactccgctcaca
ccttcaccgagagtgctgcttggtcgcccttacagcattgatgccggcagtacaacagta
acaccagggccaggagaacagaccgttgatgttgaaccgcggattaatataggatcaaga
ttccaggcagatattccagaacttcaaggtccgtcatcccttgagaaagaaacggacaat
gcaaccctggtttggacaccgttgccagatctagaaaacagagagtcccaacaaagagtg
gacatttttctgagcatgtcttgctccagtgtgctgcctggaggaggaaccaatctggaa
tatgcattgcaccttctctatgagtgcaaagggaacatcacgagggcgctggagacactg
cttttgagaaacccccataggctgcataaccatcccttagcaaattaccattatgcagga
tcagacaaatggaacgctactgaaaagaagaactttaacaaggcagtaaatacctgcaac
aaagacttttttcatgtacaaaaaatgatcaagtcaaagactgtgtcacagtgtgtagaa
tattactacacctggaaaaagatcttacacctggggagaaggcacagaactcggcttgct
gaggttaatgaagatggtatgacaagtgctgatgatgatgtagacgagaatgaagggctg
gaagacaaaatatatgaaagtgggtgtgacctgatggcgaaatcaccagacctacgacac
gccacagacttgcctcggcccgccggtgcatacagtgtttcgcccattggctcatttgtc
tgtgagatgggaaattgtggagctatattttcttccaggcaggctctgaacgggcacgct
cgtattcacggaggaacaagtgcaccaagtaaggtgtttccagttccaggtagcactaga
acaaagtccaacattcaaagtggctattgctcagttaaaagctctccagctcacagcaac
actagcggagagacagatacatccacaatttttccatgcaaagtgtgcggcaaggtattt
ttcaagatcaaaagccggaatgcgcacatgaaaactcaccggcagcaagaagagcagcag
agacaaaaagcacagaaagctgatgtagcagcaaagatggcagacaccatcgcaaggacc
atagtaaggactacggtgtctgcagagcacattctgccttttgatcacctaagccttgta
aaaagcatggagcaagactttgataatgatgttgctcaggatttagaggatgtcctagaa
gacacagacattattcatgctgatctccttttggatgatgaagatactgatttacttcaa
gatggggctgttctgtag
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