Xenopus laevis (African clawed frog): 108717851
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Entry
108717851 CDS
T01010
Symbol
arid1b.S
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X5
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108717851 (arid1b.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108717851 (arid1b.S)
03021 Transcription machinery [BR:
xla03021
]
108717851 (arid1b.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
108717851 (arid1b.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Helix-turn-helix
ARID
108717851 (arid1b.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108717851 (arid1b.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108717851 (arid1b.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108717851
NCBI-ProteinID:
XP_018120744
Xenbase:
XB-GENE-6487654
UniProt:
A0A8J0VG82
LinkDB
All DBs
Position
5S:43398235..43635801
Genome browser
AA seq
2309 aa
AA seq
DB search
MIMAAQVVSAIAASPATNANNKGKSQGLPGLNQDMNSGGPGPVPGSMSGLGDGAAANSST
NNNNNGDHHHHNSLLHHLHHHHLHREVSLTTGTPLSSGNSNNTNNNSSLDGGLKEGRNSA
VSPHYHNVDIGGGVPNHKFKGSSRSGGDYLAPISHPLHPPHHHAHHPQQHPSHQAPHHLQ
QHPPYHPNHPHPPQQLNQLQPQQLSGTIQQPSPNKSSPGGGSSSSEASDMENQQQQQQHG
GGVGEDCSNSAAAAGKDVALASQGDSQPRRATKADEDDLQQGKMRVGEPVSGQYEHTVLG
GGQGNGSSNNNNTTNNNNIGGSSGGSLSSSSSSSSSSSSVSEFNSYYGSTSTSRAGPCFD
QHGRQQSPGIGMMNSGTAAPNSSIEPIQNSHDGFGGDGSHYEQHYQGSYSRAAAAAAAAG
GGIGAYGSSAAGYGLLSSSRQSSSSGSSGSSILMGGGGTSLGKAPGASNAGGFQRYQGQN
PHPSGATPTLNQLLTSPSPMMRSYGGSYPDFGSSGAPQQLSGSTQGVGMGKDMGSQYGAA
NTAWGAQQRNHPAMSPGSTGQNSNRPQGSPMDPMTMKRPQLYGMGNTPYSQTQQSSPYPG
QPYGSPQRYPMGIQGRTQGALGGMQYPQQQMPPQYGQQGVSGYCQQPYYNQQSQPQYLQP
QAQYLSQVQQRYPPQQDVSQEGYGNRPQPPSMAPGKNNNEDMNLMQQERPSSLPDLSGSI
DDLPTGTEATLSSAVSASGSTSSQGEQSNPAQSPFSPHASPHLPSLQGGGPSPSPVGSPV
GSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQDRGFISAVQRNNQIPQ
YGPQNTGPPMSPHPPPPGGQMHPGMGSFPQSNLSGSYGPQMGQYGPQGNYSRSPSYTGVQ
NTNYSGPGPGMNMNANSQIHGQGPSGSMSMGRMPGSAIQNRVYATNMGNMPPNSSSMSQQ
GTPGMGPPMPSVNRKAQEAAAAVMQAAANSAQNRQGGFPGMNQSGPMGSNSSYNQSMSHN
SGMMNSQPSPYNMINSSTGHLGLVEMINTGESKMVSSLKLDGKEHSPAPPEAKSKKASSS
TTTGEKITKLYELGNEPERKMWVDRYLIFMEERGTPVANLPAVGRKALDLVRLYFSVKEI
GGLAQVNKNKKWRELATSLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEIFNPG
ESKKQPKIQPPSPANSGSYQGPHTPQSTGSNSMTEMSIELKPPTPASTPHGQLQPMPGGR
NSAVSVQDPFSDTTESSFQKRNAMTPNAPYQQGMNVPDMMGRMPYEPSKDPFGGMRKVPG
SSEHFMAPGQMPNSNMQDMYNQTPSGVMSNMGMSQRQQFSYGPGGYDRRSEYGMGAEGSM
GPPGQNSMAPSNSDPGMYSPNRYQGQQRHEPYGQQYPGQGPPSGQPPYGGHQTGMYPQQQ
NYKRHMDSMYVPQAKRHEGEMYNMQYGSQQQDMYNQYGNSYSGQERRPMQGQYPYPYNRE
RMQGPGQMQQHSMGSQFMGGSMQSSASEGAQQTMWASRNDMPYSYQVRQGPASATQAGSY
SAMNRSDDMMGPDQRMNHDNQWSSHGNQRQPSYMSPTAAMQPITRAPPSSYQTPPSMPNH
ISRAPSPASFQRSLENRMSPSKSPFLPSMKMQKGLATTTASQSTVTPAQVPVRREICFPP
GSVETTQAILKPRRKVTSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTIAT
FNLSQLPGFLELLVEYFRKCLIDIFGILKEYEVGEPVQKALSPTTEDTYSAMEEDVSLNY
SDTEEDDEDEDDKEEEKVFSHLNSELPIDSSERPKQASKFDKLPIKVVKKSNLFVIDRSD
RLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPNNKRTPQSTNSPIKKNKGHEEKV
VAGDEEQTDKSITATIDDVLSARPGALPEDSNNEFLQIESCKLPLGIHQANQHRNITLLE
DEPSSRDDTALCTIAEWKDSLAKRCICVSNIIRSLSFVPGNDTEMSKHPGLVLILGKLIR
LHHEHPERKRAPQTYEKDEENNKGVSCTKDEWWWDCLEVLRENTLVTLANISGQLDLSAY
TESICLPILDGLLHWMVCPSAEAQDTFPTVGPISVLSPQRLVLETLCKLSIQDNNVDLIL
ATPPFSRQEKLYATLVRYVGDRKNPVCREMSVALLSNLAQGDTLVARAIAVQKGSIGNLI
SFLEDGATMAQYQQSQHNLIHIQPPHLEPPSVDMMCRAAKALLAMAKVEENQSEFLLQEG
RLLDISISAVLNSVVASVICDVLFQIGQL
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcacaagtggtttcagctatagcagcctctccagccacaaatgcgaac
aataaggggaaaagccagggtcttcctgggctcaatcaggacatgaacagtgggggtcct
gggccagtacctggatctatgtctggattgggagatggagcagcggccaacagcagcaca
aacaacaacaataatggggatcaccaccaccacaatagtcttctgcaccatctacatcat
catcaccttcatcgtgaagtaagcttgaccactggaaccccactgtcctctggcaattcc
aataacaccaacaacaacagcagtttagacgggggacttaaggaaggcaggaattctgca
gtgtcaccccattatcataatgtggatataggtggtggggtcccaaatcacaagtttaaa
ggtagtagtagaagtggtggggattatcttgcacccattagtcacccacttcaccctcct
catcaccatgcccaccacccccaacagcacccatcccaccaggcaccccatcatctgcaa
cagcaccctccctaccaccctaaccatccacatccaccccagcaactaaatcaactgcag
cctcagcagctatcagggaccatccagcaaccaagccctaataagagcagccctggagga
ggcagcagcagcagcgaggcgtcagacatggaaaatcagcagcagcagcaacaacatggt
ggtggtgtaggggaagattgctccaacagcgctgctgcagcagggaaggatgtggctttg
gccagtcagggggactcccagcctaggagggctacgaaggcagacgaggacgatttgcag
caggggaaaatgagagttggggagcccgtgagcggccagtatgagcacacagtgctgggg
ggagggcaaggaaacggcagcagcaataataataatactactaataataataatattggt
ggcagcagcggaggatctttatcgtcttcttcttcctcgtcctcctcttcttcctcagtg
tccgaatttaatagttattatggcagcacaagtacaagcagagcagggccttgctttgat
caacatggcagacaacaaagccctggaatagggatgatgaattctggaaccgcggccccc
aacagcagtatcgagcccattcagaactcccacgatgggttcggcggcgacggcagtcac
tatgagcagcactaccagggatcgtacagtagggccgcggcggcagcagcagcagcagga
ggggggataggagcgtatggcagctcagcggctggatatgggctactcagctcctcaagg
cagagcagcagcagtggaagctccggcagcagcattttgatggggggagggggcaccagc
cttggcaaagcacccggtgcctccaatgcagggggcttccagcggtaccaaggacagaac
ccgcacccttctggggctacccctactctcaatcagcttctaacctcacccagccccatg
atgaggagctacgggggcagctaccccgatttcggaagctctggtgctccccaacagcta
agtggaagtacccagggagtgggaatgggcaaggacatgggctcccagtatggagcagca
aatactgcttggggagcacaacaaagaaatcaccccgcaatgagtcccggtagcactggc
cagaacagcaacagacctcagggtagcccaatggatccaatgacaatgaagagacctcaa
ctttatggaatgggcaacactccttattcacaaacacaacagagcagtccttaccctggc
caaccatatggttctccacagagatatccaatgggaattcaagggcgtacccaaggtgct
ttaggaggaatgcagtatccacaacaacagatgccgcctcagtacggtcagcaaggtgta
agtggctactgccaacagccatattacaaccagcagtcgcagcctcagtatctgcagccc
caggctcagtatctgtcacaagttcaacagcggtatccaccccaacaggatgtttcgcaa
gaaggttatggaaacagaccccagcctccttcaatggctccaggaaaaaataacaatgaa
gacatgaatctaatgcagcaagaaaggccatcaagcttgccagacttatctggctccatt
gacgacttgccaactgggacagaagcaacgctaagctccgcagtcagcgcttctggttct
acaagcagccagggggagcagagcaatcctgcacagtcacccttctcaccccatgcctca
ccacatctcccaagcctccagggtggggggccatcaccatcccctgtgggttcacctgtt
gggagcaaccaatcacgatctggtccaatatcccctgctagtatacctggaagccaaatg
cccccacagcctccaggtagccaatcggaatccagttcacatcctgcattgagccagtca
ccaatgccacaggatcgaggctttatatctgctgtgcaaaggaacaatcaaataccccag
tatggacctcagaatacagggccacctatgtctcctcatcctcctcctcctggaggccaa
atgcatcctggtatgggcagctttccccagagcaacttgagtggcagctatgggcctcag
atgggtcagtatggaccacaaggcaattattcaaggtcaccgtcctacactggagtccaa
aacacaaactacagtggtcctggcccaggtatgaatatgaatgccaacagccagatacat
ggacaagggccaagtggatctatgagtatgggcaggatgcctgggagtgcaatacagaac
agggtatatgccacaaatatgggtaacatgccccccaactcttccagcatgtcacagcaa
ggaactccaggaatgggaccaccaatgccatctgtgaatcgcaaggcacaggaagcagct
gcagctgtgatgcaggctgctgcaaattctgcccagaacaggcaaggcgggtttcctgga
atgaaccagagtgggccgatggggtcaaattcttcatataaccagtcaatgagtcataat
tctggcatgatgaattcacaaccatccccatataatatgataaacagttccacaggtcat
cttggtcttgtagaaatgataaataccggagaatcaaagatggtatcatccctcaaacta
gatggtaaagaacattctcctgctccacctgaagctaagtcaaagaaagcaagttcttca
acaaccactggagaaaaaatcacaaaactgtatgaattaggaaatgagccagaaaggaag
atgtgggtggataggtacttgatcttcatggaagaacgaggcacgcctgttgcaaatcta
cctgcagttggaagaaaagctcttgaccttgtcaggctctacttctctgttaaagagatt
gggggtttagctcaggttaataaaaacaagaagtggcgagagctggcaaccagtctgaat
gttggcacctccagcagtgcagccagctccttgaaaaagcagtacatacagtatctgttt
gcctttgaatgcaagatcgagagaggggaggagcctcctcctgagattttcaatccagga
gagtcaaagaagcagcctaagattcagccgccatctcctgctaactcaggttcgtatcaa
ggtcctcatacaccccagtccactggcagcaactccatgacagagatgtcaattgaacta
aagccaccaacaccagcctcgactccacacggccaactgcagcccatgcctggggggagg
aatagtgctgtcagtgtacaggaccccttctctgatacaactgaatcatcttttcaaaag
cgtaatgccatgaccccaaatgctccctaccagcaaggcatgaatgtaccagacatgatg
ggaagaatgccgtatgagcccagcaaagatccatttggtggaatgaggaaagtaccggga
agcagtgagcattttatggctcctggccagatgcccaacagcaacatgcaggatatgtac
aatcagactccctctggagttatgtccaatatggggatgagtcaacggcaacaattctcc
tatggacctggaggctatgacaggagatctgaatatggaatgggtgctgaagggagtatg
gggccaccgggtcagaacagcatggcaccttcaaacagtgatccgggcatgtattcccca
aaccgctatcaaggacaacaaagacatgaaccttatggacagcaatatccaggacaaggt
ccaccttctggacaaccaccatatggaggacaccagacaggaatgtatccccagcaacag
aactacaagagacatatggatagtatgtatgttcctcaagccaaacgtcatgaaggagag
atgtacaatatgcagtatggcagccagcaacaagatatgtataatcagtatggtaattca
tattctggccaagaaaggcgacccatgcaaggacagtatccatatccctacaatagagag
aggatgcaaggcccaggacaaatgcaacaacacagcatggggtctcaatttatgggagga
tccatgcagtcatcagcaagtgaaggtgctcaacaaactatgtgggcatcacgaaatgac
atgccttattcataccaagttaggcaaggccctgcaagcgcaacacaggcaggatcatac
tcagccatgaatcgatctgatgatatgatgggtcctgatcaaagaatgaatcatgacaac
cagtggtcatcccatggtaatcaacgtcagccttcctatatgtctcccactgcagctatg
cagccaatcaccagagctcctccatcatcttatcagacccctccgtcaatgccaaatcat
atttctagagctcccagcccagcatcatttcagcgttcactggaaaaccgtatgtcacct
agcaagtctccatttctgccttccatgaagatgcagaagggtttggcaactaccacagca
tcacaaagcacggtaacccctgctcaggttccagtgaggcgagaaatttgttttcctcca
ggatcagtggagaccactcaggcaatcttaaaaccaagaagaaaagtaacttcaaaagat
attgtaacacctgaggcttggagagtaatgatgtcactaaagtctggcttgttggctgaa
agtacctgggctttagatactatcaatatcctgctatatgatgacagcactattgccact
tttaatttgtctcagctgcctggatttttggaactcttggtggaatatttcagaaaatgc
ctaattgacatctttggaatactgaaggaatatgaagtaggtgaacctgttcagaaagct
ctttcaccaaccacagaagatacttattctgcaatggaggaggatgtttcacttaactat
tcagatacagaggaagacgatgaggatgaggatgataaagaagaagaaaaggtcttttcc
catctaaattctgaattgcccattgattcaagtgaaagacccaaacaggctagtaaattt
gataaactgccaattaaagttgtaaaaaagagcaatctttttgttattgatagatctgac
agacttggccgtgtacaggaatttaatagtggcctgcttcattggcaacttggagggggt
gacacgactgagcatattcaaactcactttgaaagcaaaatggaaattcccaataataag
aggactccacagtcaaccaattctccaatcaagaagaataaaggtcatgaggaaaaagtt
gtagcgggagatgaagagcaaacagataaaagcataacagcaaccattgatgatgttctt
tctgcaaggccaggggcactgcctgaagattctaacaatgagtttttacaaatcgaaagt
tgcaagcttcccttaggaattcaccaagccaatcaacatagaaatattacattattagaa
gatgaaccaagtagcagagatgacactgccttgtgtacaatagctgaatggaaagactct
ttggccaaacgttgtatatgtgtttcaaacattatccgtagtttatcatttgtgcctggt
aatgacacagagatgtcaaaacacccaggtttggtgttgatccttgggaagctaatacgt
cttcaccatgagcatccagagagaaagagagctccacaaacatatgagaaagatgaagaa
aacaacaaaggggtatcatgtaccaaggatgagtggtggtgggattgtcttgaggttctg
agggaaaatactttggtcacattagccaatatctctggacagctagatttgtctgcttac
acagaaagtatctgcttgccaattttagatggcttactacactggatggtgtgtccatct
gcagaggcacaggatacctttcccactgtggggcccatttctgttctttcccctcagaga
cttgtgctggaaacattgtgtaaacttagtatacaggacaacaatgtggaccttatatta
gctactccaccattcagccggcaagagaaattgtatgcgactcttgttaggtatgttggg
gatcgcaaaaatccagtttgtcgagaaatgtctgtggcgttgctatcaaaccttgctcag
ggggacacattggtagcaagggccatagctgttcagaaaggaagcattgggaacttaata
agcttcctggaagatggcgccactatggcccaataccagcagagtcagcataacctcata
cacattcagcctccacatctggagccacctagcgtggatatgatgtgtagagctgccaag
gctttactggccatggccaaagtggaggaaaatcaatctgaattccttttacaggaaggc
cgactgctggatatatctatatcagctgttctgaactctgttgttgcctctgttatttgt
gatgtactctttcaaatagggcagttatga
DBGET
integrated database retrieval system
