KEGG   Xenopus laevis (African clawed frog): 108718026
Entry
108718026         CDS       T01010                                 
Symbol
polr2h.S
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03020  RNA polymerase
xla03420  Nucleotide excision repair
xla04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108718026 (polr2h.S)
  09124 Replication and repair
   03420 Nucleotide excision repair
    108718026 (polr2h.S)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    108718026 (polr2h.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    108718026 (polr2h.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    108718026 (polr2h.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     108718026 (polr2h.S)
  RNA polymerase III system
   RNA polymerase III
     108718026 (polr2h.S)
  RNA polymerase I system
   RNA polymerase I
     108718026 (polr2h.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108718026 (polr2h.S)
SSDB
Motif
Pfam: RNA_pol_Rpb8 RNA_pol_RpbG
Other DBs
NCBI-GeneID: 108718026
NCBI-ProteinID: XP_018121064
Xenbase: XB-GENE-17337124
UniProt: A0A8J0VFL4
LinkDB
Position
5S:complement(86212158..86220084)
AA seq 171 aa
MAGILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLDPSVCLLL
DLISLKLRNKPYNGDKFRLVIACTLYEDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRI
EGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLAF
NT seq 516 nt   +upstreamnt  +downstreamnt
atggctggcattttatttgaagacatctttgatgtaaaggatattgatcctgaaggaaga
aaatttgatcgagtctcaaggcttcattgtgaaagtgagtctttcaaaatggatttgatc
cttgatgtcaatatacaagtttatcctgtggacttggatccttcagtttgtctgcttctg
gatcttatcagtcttaaactcagaaacaaaccttataatggtgataaattccgcttagtt
attgcctgtacgctgtatgaggatggtacattggatgatggagagtacaatcctactgat
gaccggccctcaagagctgaccaatttgaatacatcatgtatggcaaggtctatcggata
gaaggtgatgaaacatccacagaagccgctacccgcctgtctgcatatgtttcatatgga
ggattattgatgaggcttcagggagatgctaacaatctgcatgggtttgaagtagattcc
cgtgtttacctcttgatgaagaaactggctttctaa

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