Xenopus laevis (African clawed frog): 108718088
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Entry
108718088 CDS
T01010
Symbol
usp13.S
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xla01002
]
108718088 (usp13.S)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108718088 (usp13.S)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108718088 (usp13.S)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108718088 (usp13.S)
Peptidases and inhibitors [BR:
xla01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108718088 (usp13.S)
Ubiquitin system [BR:
xla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108718088 (usp13.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108718088 (usp13.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
108718088
NCBI-ProteinID:
XP_018121174
Xenbase:
XB-GENE-6486275
UniProt:
A0A1L8G415
A0A974CSK1
LinkDB
All DBs
Position
5S:complement(95340787..95406441)
Genome browser
AA seq
842 aa
AA seq
DB search
MAEDLGELLVPYMPTIRVPKSGDRVYKTECSFSYDSPESDGGLYVCMSTFLGFGREHVER
HYRKTGQSVYMHLKRHIRLKATGASGGAFPKRINGRLFLELENNTDMNTEDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNSKSPYRKLDQESWEEELQVSKFANNLVQVD
NGVRIPPSGWKCARCDLRENLWLNLTDGSIMCGRWFCSGNGGNGHALEHHKQMGYPLAVR
LGSITPDGADVYSFDEEEAVVDLHLAKHLAHFGIDMLQMQRSESGVLDNEVKPRVNDWEV
IQETGLKLKPVFGSGYTGIKNLGNSSYLTTVMQVIFSIPEFQRAYVGNLTRIFDYAPLDP
TQDFSTQMAKLGHGLLSGLFSKPPMKSELIEQVMKEEHKPQLKGINTRMFKALMSKSHAE
FSSNRQQDAEEFFLHFINLVERNSIGSENPSDVFRFLVEERTQCCQSRKVRYSQRVDYIM
QMPVPMEAATNKEELIAYDLKRREAESAKRPLPEVVRAKIPFSACLQGFSEPENVPDFWS
SALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATGL
KSGEEELPDIAPPIIIPDDPKDWSRNHFMESPDIDESSVMQLAEMGFPLEACRKAVYYTG
SMGAEVAFNWIIAHMEEPDFAEPLTIPGYGTVTSTSSHVQNALLNQPPEEIVALICSMGF
PRNYAIQALRATNNNLERALEWMFSHPESEEEAANVSGYVDTENNGIITDGEQEGPRIKD
GNGRYELFGIISHAGTSTMSGHYVCHIKKEGRWVIYNDHKVSASERPPKDLGYLYFYHRI
SC
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagatctgggagagctgctggtcccttacatgcccaccatcagggtacccaag
tcaggggacagagtctacaaaacggagtgctccttctcttatgactcccctgagtctgat
ggaggtctgtatgtgtgcatgagcacattcctgggatttggcagagaacatgtagagcgg
cattataggaaaactgggcagtccgtctacatgcacttaaaacgccacatcagactgaaa
gcaactggagcatcaggcggtgcctttccaaaaagaataaatgggagactatttttagaa
ctagaaaacaacactgatatgaacaccgaagattatgaatacgaagatgaagcaaaactt
gttatattcccagatcattttgaaattcccttgcctaatatagaggaactaccagcattg
gtaacaatagcctgtgatgcagtacttaattcaaagtctccatatagaaagcttgatcaa
gaatcatgggaagaagaacttcaggtttcaaaatttgcaaacaacctggtgcaagtagat
aatggtgtgaggattccaccaagtggctggaagtgtgccaggtgtgatctcagagagaac
ctgtggttaaacctgacagatggctccattatgtgtggacggtggttttgttcaggcaat
ggtgggaatggacacgctcttgaacaccataagcaaatgggctaccctttggcagtaaga
ctaggaagtatcaccccagatggagcagatgtgtattcatttgatgaagaggaagcagtt
gtagatctccacctggccaagcaccttgcacattttggcattgatatgctgcagatgcag
aggagtgagagtggtgtcctggacaatgaagtcaaaccaagagttaatgattgggaagtt
atccaagaaactggattaaagctaaagccagtgtttggctcaggctacactggcattaaa
aaccttgggaacagctcttaccttaccacagtcatgcaagtaattttcagcatccctgag
tttcagagagcttacgttgggaaccttacacgtatatttgattatgcacctctggaccct
acacaggatttcagcacacagatggctaaacttggccatggtctgctgtcaggactgttc
tccaaacctccaatgaaatctgagctaattgagcaggtgatgaaagaagaacataagcct
caactaaaaggcattaacactcgaatgtttaaagctttaatgagcaaaagccatgcagaa
ttttcttcaaacagacaacaagatgcagaagaatttttcctacattttataaacctggta
gagagaaatagtattggctcagagaacccaagtgatgtcttcaggtttttggtggaggaa
aggacacagtgctgccagtcaaggaaagtgcgttattcacagagagttgactacatcatg
cagatgccggtgcccatggaagctgctacaaataaagaggaactaattgcatatgacctg
aaaagaagagaagcagagagtgcaaagaggcctctaccagaggtggttcgtgccaagatc
ccatttagtgcctgcttacagggcttttcagagcctgaaaatgtgcctgacttctggagc
agtgctcttcaagccaagtctgcgggtgttaagacgtctcgctttgcttcattccctgaa
tacctggtagtccagataaagaagtttacatttggccttgattgggtgcccaagaaacta
gatgtgagtatagacatgccagatcttcttgacatcaaccatctcagagctacagggctc
aaatcaggagaagaggaacttccagatattgctcctcctattatcattcctgatgatccc
aaagattggtccaggaaccactttatggaatctcctgacatagatgaatcttcagtgatg
cagctggcagagatgggctttcctctagaagcctgccggaaagcagtgtattacacaggg
agcatgggggcagaagtagcatttaactggattattgcgcacatggaagaaccagatttt
gcagaaccgttaaccattcctggctatggaacagtgacctccacatcatctcatgtacag
aacgcgctattaaaccagcccccagaagagattgtagcacttatatgctctatgggtttc
ccaagaaattacgctatccaggcactaagagcaacaaacaataatcttgaaagagccctg
gagtggatgttctctcacccagagagtgaagaagaggctgctaatgtctctggctatgtg
gatacagagaacaatggcattatcacagacggtgaacaggaaggccctagaataaaggat
ggcaatggaagatatgaactttttgggattatcagccatgctggaacatctacaatgtca
ggacattacgtctgtcatatcaaaaaggaaggaagatgggtgatttataatgaccataaa
gtttctgcatcagagcgaccaccaaaggacttgggctacctttacttctatcatagaatc
tcgtgttaa
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