Xenopus laevis (African clawed frog): 108718124
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Entry
108718124 CDS
T01010
Symbol
dhx36.S
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108718124 (dhx36.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108718124 (dhx36.S)
03012 Translation factors [BR:
xla03012
]
108718124 (dhx36.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108718124 (dhx36.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108718124 (dhx36.S)
Translation factors [BR:
xla03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108718124 (dhx36.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
DEAD
OB_NTP_bind
HA2_N
AAA_22
AAA_19
ATPase
nSTAND3
AAA_14
NPHP3_N
NACHT
PhoH
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108718124
NCBI-ProteinID:
XP_018121238
Xenbase:
XB-GENE-6488488
UniProt:
A0A8J0VG84
LinkDB
All DBs
Position
5S:104542242..104580336
Genome browser
AA seq
1125 aa
AA seq
DB search
MSYEQRRGWGRGRGRRGRARSFSSQYESGSVENPRGGRREKPPPHLKGREIGLWYARRQG
HKSKEKERLERAVVKMDESREKHIARLLNSVQAQNNNERSSCSKGSWWATENERNNVSPQ
LRQPASSEVKDHDWDSEYAAEENEAGTYLDQQLREEMQKKRTNYKYLEMQTFREKLPSYG
MKEMIIKMINSNQVTVISGETGCGKTTQVTQFILDDHINRGKGSSCYIVCTQPRRISAIS
VAERVAAERGETCGRENSTGYQIRLESQMPRRQGSILYCTTGIVIQWLQSDPHLANVSHI
VIDEIHERNLQSDVLMAIVKDLLTLRSDLKVILMSATLNAEKFSQYFENCPMLHIPGFTY
PVKEYLLEDVIEMVRYMPKDSDRRPRWKKRFMQGRMIRPEKEQKEELYRERWPDFVRKLQ
TKYSQSTIEALETADDEKVDLDLIVELIRFIVLKGEDGAILVFLPGWDNISTLHDLLMSQ
VMFKSDKFIIIPLHSLMPTVNQKEVFKRPPPGVRKIVIATNIAETSITIDDVVHVIDGGK
IKETHYDTQNNISTMTAEWVSHANAKQRKGRAGRVQPGHCYHLYNSLRDSLLDDYQLPEI
VRMPLEELCLQIKILKLGGIGSFLSKLMDIPSREAICLAINHLMELNALDNHEELTPLGF
HLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKMADARRKELSRN
LKSDHLTVLNAFEGWEYAKWRGARAERDYCWENFLSSNTLKMLSNMKGQFAEHLLNAGFV
SSRNPNDPKSNNNSNNEKLIKAVICAGLYPKVAKIRQSLSKKRKMVKVYTKSDGKVNIHP
KSVNVEETEFHYSWLVYHLKMRTSSKRIALLPDVKTFMQGVSHLAPPVRAPAPLWDLTLV
LRALQDPPFEPLGSVPLLWLTWKTTFLLAIASARRVSELSALSCKPPFLVFHHDRAVLCT
IPSFLPKVVSDFHLNQEITIPTFCPSHSNPKEKALHTLDPVRALKFYLHRVQDFRKVDSL
LVIPSGPHQGGAATKSSISRWIKQAIHRAYVARGRTPPARLTAHSTRGMSTSWAFRNQAS
AEQLCKAATWTSVHSFSKFYHFDTFAASDTRFGRRVLQAAVVTST
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgagcagcggagaggatggggacgaggcagaggcagacggggcagagcaaga
agcttttcgtcccagtatgaaagcggctctgtggagaatccgagaggtggcagaagagag
aaacccccgccacatctgaaaggccgggagatcggtttatggtatgcccggagacaaggc
cataaaagcaaagaaaaagagaggctggagagagctgttgtaaaaatggatgaatccagg
gagaaacatattgctcgactgctgaactctgtgcaggcacagaataacaatgaaaggtca
agttgctctaaaggatcctggtgggctactgagaatgaacgaaacaacgtgtctcctcaa
ttaaggcagccagcatcatctgaagtaaaggatcatgattgggattctgaatatgctgct
gaggaaaatgaagcaggcacatatttggatcaacagcttagagaagagatgcagaaaaag
agaacaaattataaatatcttgaaatgcagacatttcgtgagaagttgccttcctacggt
atgaaggagatgataattaaaatgataaattcaaatcaagtgaccgttattagtggagaa
actggctgtggtaagactacacaagtaacacagtttattctggatgaccatatcaacagg
ggaaaaggttcttcttgctacattgtatgtacacagcccaggaggattagtgccatatcg
gtggcagaacgtgtggcagcggaaagaggagaaacttgcggaagagaaaacagtacagga
taccaaatccgtcttgaaagtcaaatgccacggagacaaggttctatattatattgcaca
actggaattgtgatacagtggctccagtcagacccgcacttggccaatgtcagtcatatt
gttatagatgaaatacatgagaggaaccttcagtctgatgttctcatggcaattgttaaa
gatcttctaaccttgaggtcggatttgaaagtcattttgatgagtgccactttgaatgca
gagaagttctcacagtattttgagaactgtccaatgctgcacattcctgggtttacttac
cctgttaaagagtacctccttgaagatgttatagaaatggttcggtacatgccaaaggat
agtgatcggaggccccggtggaagaaacgatttatgcaagggcgaatgattcgtcctgag
aaggagcaaaaggaggagctgtacagggagcgctggcctgactttgtacggaaactgcag
accaaatactctcaaagtaccattgaagctctggaaactgcagatgatgaaaaagttgat
cttgaccttattgtagaactcataaggttcattgttctgaagggagaggatggcgcaatc
ttggtttttctgcctggatgggacaacattagcaccttgcatgatttgctcatgtcacaa
gtgatgtttaaatcagataaatttattattattcctttgcattccctgatgcccactgta
aaccagaaagaggtttttaaaaggccgccaccaggagtgagaaaaattgtaattgccacc
aatattgcagagacaagtattactatagatgatgttgtgcatgtaattgatggaggaaaa
ataaaagagacccactacgatacacaaaataacatcagcacaatgactgcagaatgggtt
agccatgccaatgccaagcaaaggaaaggccgtgcaggcagagttcaacctggccactgc
taccatctgtataacagccttcgggatagtcttttggatgactatcaattaccagaaatt
gtgaggatgccattggaggaactttgcctccagatcaagattttaaagcttggtggcatt
ggctcttttctgagtaaattaatggatatcccatctagagaggcaatatgtctggcaatt
aaccatcttatggaattgaatgctctagataatcatgaagaattgacccctttggggttt
cacttggcacgattaccagtagaaccacacattggcaagatgatcttgtttggagctctt
ttctgttgtctggatccagttctcaccattgcagcaagcctcagttttaaagatcccttt
gtcattcctttgggaaaagagaaaatggctgatgcaaggcggaaggaattatccagaaac
ttaaaaagtgaccatctaacggtgttgaatgcatttgagggctgggaatatgccaaatgg
cggggagccagagcagagagagactattgctgggaaaactttctgtcttctaacacatta
aagatgttgagtaacatgaaaggacagttcgctgaacacctactaaatgcaggttttgtg
agcagtaggaatccaaacgatcctaaatcaaataacaattccaacaacgagaagctcatt
aaagctgttatttgtgctggtttatatccgaaggtagcaaagattcggcaaagtctcagc
aaaaagcggaaaatggtaaaggtatatacaaaatccgatggaaaggtcaacattcaccca
aagtctgtcaatgtggaagaaacagaatttcactattcatggcttgtctaccatctgaag
atgagaacctctagtaaacgaattgctcttttgcctgacgtcaagacttttatgcaggga
gtatcacatttggctcctccagttcgagcaccagctcctctatgggatctcaccctagtc
ctacgagccctccaagaccctcctttcgagccattgggatccgtaccgcttctctggctt
acctggaaaactaccttccttcttgccattgcctctgctagacgggtttctgagctcagc
gcgctgtcatgcaaaccgcctttcctcgtttttcaccatgatagagcggtcctatgcact
attccatcttttttgcctaaggttgtatctgattttcacctgaaccaagagattacaata
ccaaccttttgcccttcacattccaatcctaaggagaaggctctacataccctggatcct
gtcagagctctaaagttttacctacacagagtccaggactttcgcaaggtggactcctta
cttgtcattccttcaggcccccaccaaggaggggcagccacaaaatcatccatttcacgc
tggatcaagcaagcgattcatcgagcctatgtggcacgtggaagaacgccaccagctaga
ctcacagcccactctactaggggaatgagtacgtcctgggcgttcaggaaccaagcatca
gcagaacagctgtgcaaggcagctacgtggacctctgtccactccttttcaaagttttac
catttcgatacctttgcggcttctgacactcgcttcggcagaagggtgcttcaagccgct
gtggttacttctacctag
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