Xenopus laevis (African clawed frog): 108718139
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Entry
108718139 CDS
T01010
Symbol
trpc1.S
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xla04040
]
108718139 (trpc1.S)
Ion channels [BR:
xla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108718139 (trpc1.S)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
Dsc3_C
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
108718139
NCBI-ProteinID:
XP_018121270
Xenbase:
XB-GENE-17332503
UniProt:
A0A8J0VLM2
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Position
5S:107308373..107346799
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AA seq
778 aa
AA seq
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MAALYQSTDSSSPNKFLALKDVREVKEETTLDERLFLLACEKGDYYMVKKLLEENSSEEL
NINSVDVLGRNAITISIENENLDILQLLLNYGCQSTDALLVAIDSEVVGAVDILLNHQPK
WRTRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDVSLPKPHAVGCEC
TLCTAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSADLKELSLVEVEFR
NDYEELAQKCKTFAKDLLAQARNSRELEVILNHQSSDEPLDKRGLLEERMNLSRLKLAIK
YNQKEFVSQSNCQQFLNTVWFGQMAAYRRKHTCKKILIVLTVGMFWPVLSVCYLLAPKSQ
VGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNEDKKNTMGPALERIDFLLIIWLIGMV
WSDVKRLWYDGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNKFHSIAERKDWDAFHPT
LVAEGLFAFGNVLSYLRLFFMYTTSSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIGL
TQLYDKGYTANAQKDCVGIFCEQQSNDTFHSFTGTCYALFWYIFSLAHVALYVTRFSYSE
ELQSFVGALIIGTYNVVVVIVLTKLLVAMVHKSFQLIANHEDKEWKFARAKLWLSYFDDK
CTLPPPFNIVPSPKTICYLFNSISKWICSHTTSGRVKRQNSLKEWKSLRQKRDQNYQKVM
CCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEMRDLLGFRTSKYAMFYPRN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctttaccagagcacagactcgtcttccccaaataaatttttggcccttaaa
gacgtcagagaagtgaaggaagagaccactttggatgaaaggcttttcttattggcctgc
gagaaaggtgattactatatggtgaaaaagcttttggaagaaaacagctcagaagaactg
aacatcaattcagtggatgtactagggagaaatgctataacaatatccattgaaaatgag
aatttggacatcctgcagcttcttcttaattatggatgccagtctaccgatgccctcctt
gtggctattgactcagaggtggtgggagctgtggacatcttgttaaatcatcaaccaaaa
tggagaacaaggccaactattgtaaaacttatggagcgaatccagaatccagaatattcc
acaaccatggatgtggctcctgttatcttggctgctcatcggaataactatgagattctt
accatgcttctcaagcaggatgtctctctcccgaagcctcatgctgtgggctgtgagtgc
accctttgtacagccaaaaacaagaaggacagcttgagacactccaggtttcggctcgat
atctatcgatgcttagccagtccggccctaattatgctgactgaggaggatccaattttg
cgggcctttgaactcagtgcagacttaaaagagctcagccttgtagaggtggaatttcgg
aatgattatgaagaacttgctcaaaagtgtaagacttttgctaaagacttgctggcccag
gcccggaactcccgagagcttgaagtcattctaaaccatcaatccagtgatgagccttta
gataagagagggctgcttgaggagcgaatgaacttgagccgtttaaaacttgctatcaag
tacaatcagaaggagtttgtatctcagtccaactgccagcaatttctgaataccgtctgg
tttggccaaatggcagcgtacagacggaaacacacctgcaaaaagattttgatcgttctt
accgttggaatgttttggccagtcctctctgtgtgctacttgctagcccccaaatcccaa
gttggacgtataattcataccccatttatgaaatttattatacatggagcatcttacttc
acttttctgctgcttcttaacctatattctttggtttacaatgaggataagaagaacacc
atgggaccggcattagaaagaatagatttccttcttattatatggctgatagggatggtt
tggtctgatgtgaagcggctctggtatgatgggctggaggattttttagaggaatccaga
aatcagctaagctttgtcatgaattccttatacttggccacttttgctttgaaagtagtg
gctcacaacaagttccattctattgcagagaggaaggattgggacgctttccacccaaca
ctggtggcagagggtctgtttgcatttggcaatgtgctcagctacctccgtctcttcttc
atgtacacgaccagttcaatcctggggccacttcagatctccatgggtcagatgctgcaa
gactttgggaagtttctgggcatgttcctgcttgtgctgttctccttcaccatcggtctg
acccagctgtacgataaaggctacaccgctaatgcacagaaggattgtgtgggcattttc
tgtgagcagcaaagcaatgacacgttccactcgttcactgggacatgttacgctctgttc
tggtacatcttttctttggcacacgtggctctctatgtcacccggttcagttacagtgaa
gagcttcagtcctttgtaggagcacttattataggaacgtacaatgtggttgttgtgatt
gtactcaccaagctcctagtagctatggtacacaaaagcttccaacttatagcgaatcac
gaggacaaggagtggaagtttgcccgggccaagctctggctcagctactttgatgataaa
tgcacgctgcctccaccgttcaatattgttccctctcccaaaacgatctgctatcttttc
aacagcataagtaaatggatctgctctcatacgacttcagggagagtcaaacgtcagaat
agcctaaaggagtggaagagcctgagacagaagagggatcagaactaccagaaggtgatg
tgctgccttgtgcatcgatatctcacctccatgagacagaaaatgcaaagtaccgatcag
gccaccgtggaaaacctaaatgagctccgtcaggatctctcaaaatttaggaatgagatg
agggacctgcttggtttccggacctccaaatatgcaatgttctacccaaggaattag
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