Xenopus laevis (African clawed frog): 108718185
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Entry
108718185 CDS
T01010
Symbol
tmtops.2.S
Name
(RefSeq) vertebrate ancient opsin
KO
K04256
c-opsin
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xla01009
]
108718185 (tmtops.2.S)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
xla04030
]
108718185 (tmtops.2.S)
Protein phosphatases and associated proteins [BR:
xla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108718185 (tmtops.2.S)
G protein-coupled receptors [BR:
xla04030
]
Rhodopsin family
Vision
Opsin
108718185 (tmtops.2.S)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srx
7TM_GPCR_Srsx
7TM_GPCR_Srw
MP_p6
Motif
Other DBs
NCBI-GeneID:
108718185
NCBI-ProteinID:
XP_018121347
Xenbase:
XB-GENE-17338786
UniProt:
A0A1L8G4Y3
A0A974CSD3
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All DBs
Position
5S:complement(115177360..115259336)
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AA seq
392 aa
AA seq
DB search
MAFHSSSPSCSDSSSVTCRSSIQQYGPENHPNLSPTGHLLVAVFLGVIGSLGFFNNLLVL
ILFCQYKALRSPINLLLMNISLSDLMVCILGTPFSFAASTQGRWLIGETGCIWYGFINTL
FGTVSLVSLAVLSYERYCTMLRSTEADLTNYKKAWLGILVSWIYSLVWTLPPLFGWSKYG
PEGPGTTCSVNWHSHDANNISYIICLFIFCLALPFAVIVYCYGRLLFAVKQVSGVNKGNS
RAREQRVLVMVIVMVVCFLLCWLPYGVMALVATFGKPGIISPSASIIPSVLAKSSTVYNP
IIYIFLNKQFYRCFTALIHCNKDALVSSNKGSSKTTKIILTVRKLPDTNFTVNASSTPPT
SSVAKNEANNADNKTHNGNTKPAKTLVAHYTI
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcttttcacagctcaagccccagttgcagtgacagcagcagtgtcacctgcaggagt
agcattcagcagtatgggccagaaaaccacccaaacttgtccccaactggccacctgctg
gtagcagtgttcctaggagttattggaagtttgggttttttcaataaccttctggtgctg
atacttttttgccaatacaaagccctgcgctccccaattaacttgctcctgatgaacatc
tctctgagtgacctgatggtctgcatccttgggacaccattcagctttgcagccagcaca
cagggacgctggctcataggagaaactggctgcatctggtatggattcatcaacacgctt
tttggaacggtctccctggtgtccttggcagtcctgtcttatgagcgatattgcacaatg
ctccgaagcaccgaggccgatttgacaaactataaaaaagcctggcttggaatactggta
tcttggatatactcgttggtttggacacttcctccactttttggatggagtaaatatggg
ccagaaggacctggcacaacctgctctgttaactggcactcacatgacgccaataacata
tcttacattatctgcctctttatcttctgcctggccttgcctttcgcagtcattgtttac
tgttatgggagactgctttttgctgttaaacaggtcagtggagtaaataaaggtaattca
cgtgcccgggagcagagagtacttgtcatggtcatcgtgatggttgtttgcttcctgctt
tgctggctgccctatggagtaatggcattggttgccacgttcggaaagccaggcatcata
tccccttctgcaagtataatcccctctgtgctggcaaagagcagtactgtgtataacccc
attatttacatcttcttaaacaagcagttctacagatgcttcactgccctgattcattgc
aacaaagacgccttagtctccagcaacaaaggttcatccaaaaccaccaagatcatctta
accgttcgcaagctgccagatactaacttcacggtcaatgcgtcttccaccccacctacc
agctcagtggcaaaaaatgaagccaacaatgccgacaacaaaactcacaacggcaacaca
aaaccagccaagactctagttgctcattatacaatttga
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