Xenopus laevis (African clawed frog): 108718200
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Entry
108718200 CDS
T01010
Symbol
hps5.L
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108718200 (hps5.L)
Membrane trafficking [BR:
xla04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
108718200 (hps5.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
PEP5_VPS11_N
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
Beta-prop_Vps41
Beta-prop_IFT140_2nd
Beta-prop_RSE1_2nd
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
108718200
NCBI-ProteinID:
XP_018121378
Xenbase:
XB-GENE-6488773
UniProt:
A0A1L8I297
A0A974I5U6
LinkDB
All DBs
Position
1L:206460493..206495522
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AA seq
1106 aa
AA seq
DB search
MASAALVPESHSHVLAEFDSLDPLLSALRLDSNRLKCTCLSVSRKWLALGSSGGGLNLIQ
RDGWKQRLFLTHKEGAISRVSCCSHDEDYVAVATSQGMVVVWELNQERRGKPERIYVSSE
HRGRKVTALCWDTAVLRVFVGDHLGKVTAIKLNSSKQGKAAPAFVMFPVQIITTVDSRVV
QLDYLDGKLLISSRTRSYLCDTEREKFWKIGNKERDGDYGACFFPAGRNLVGQQPLIYCA
RPGSRMWEVNFEGEVQSTHQFKQLLSSPPLPVIRLRLDLQYDSTPGPPQSLAFTKLLYLS
EHSVLTWTDRTIYIFIPQNVQVLLWSEVRDIQDLSIYKNELFCLHHDGKVSHFSLLPVER
CVERLIKRSCWDLAARVCHLFQNIIVLSKGRKVLPMDKLEHLKAQLDIVTQQESIAQLED
LMSKLEPLDSACSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEDCESLHSQTLSEDDR
LREQEEEQGDLDNVSHASMTADSDRNETLLPFNIQLPFRSTSPRVSLQAMKDSVTSFVRK
TTEKIGTLHMNPDIRMRQEVKEDDRLLDVPVNDMSQPEEEKNEVDSHPPSCEEVSLGELK
LSTAAAISKIQDPEVLFDPEAMVIILNTWLPYLEKAFSPQADPSDQDSDGEVPTTSSSCN
NEDGEEGDFRPELGMTKDEGRAQTDLTKTEHPVIFHVTAPFPIEESLRRDLSSLAMLCLE
FKVFTDGKDPLPSDLGSSACHFIQSYFFLLDLKRLKRCIALQYTDCPTVWDTYVQGLQDL
TSSTPVAGAIASEALVSVIKLLSDEEPWDSPLLLAHACRMYEKFGETAVRSLIRFYPSIL
PLDVMQLCRGNQRHFLAYLDSLIKSKPVDQRSSLLQSLVQPESLKMDWLLLAVSHDAPQT
SNTLDPEGNPKPNSHLFTWGYGPLIDLLIKLPADYETKQKMSTVCRTFGYWRGYVSLCLE
LDRRTEALTNIVFLDDLSLIDEVSGVIPETMDEWKLILQLAKSHDSYPHSHDHHQHQNGT
ENGSSVSNGHTDWPNCITVENVALLLMKVIGTERAWPYLQEWGATESFSDRYTKVCDIMK
VAEKRQRALIQSMLERCETFLWSQQA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgcattggtaccagaatcccacagccacgtgctggctgaatttgactcc
cttgatcctttgctttcggctcttcgtttggattctaatcgtttgaagtgtacttgcctg
tccgtgtctcgaaaatggctggcgctaggaagttctggtggaggcctaaacctcatacaa
agggatgggtggaagcaacgtctctttcttactcacaaggaaggtgccatttctcgtgtt
tcttgctgcagtcatgatgaagactatgtagctgtggcaaccagccagggtatggtggtg
gtctgggaactgaatcaagagcgtcgcgggaaaccagagaggatctatgtatcatcagag
cacaggggaaggaaggtgactgccctctgctgggacacagctgtgctacgtgtctttgta
ggggatcatctaggcaaagtgacagcgatcaaactaaactcatctaaacaaggaaaggca
gcccctgctttcgtcatgtttcctgttcagatcatcaccactgtcgactcccgcgtggta
caactggactatctggacggcaaattgctcatatcctcccgaacacgttcctatttatgt
gatactgagagggaaaaattttggaaaattggcaacaaggagagggatggtgattatgga
gcctgcttttttcccgctggaaggaacttggttggccagcagccattaatttactgcgct
cgacctgggtcccggatgtgggaagtgaactttgaaggagaggtgcaaagtactcatcag
ttcaagcaactcctgtcctctccacctcttcccgttattcgtttacgattagaccttcag
tatgattccacccctggacccccacagtctttagcattcactaaactcttgtacttaagt
gaacacagcgtgctgacgtggacagaccggacaatttacatctttattccccagaatgtg
caggttctactgtggagtgaagtaagagacatccaagacctatccatttataagaatgag
ctgttctgtctgcaccatgatggcaaggtctcgcacttctccttgcttccagtggagcga
tgtgttgaacgtcttatcaaaagaagctgctgggatctggctgccagggtttgccacttg
ttccagaacatcattgttttaagtaaaggaaggaaagtcttgcccatggacaaactagaa
cacttgaaggcccagctggacattgtaacacagcaagaatccattgctcagcttgaagat
ttgatgtccaagcttgaacctctggattcagcctgcagcagcagacggagcagtatctcc
tcacatgaaagtttcaatgtgttggactgtggaatctatcgggttatcagccgcagaggt
agccaatccgatgaagactgtgagtccttacacagccaaacattgtctgaggacgaccga
ttacgagaacaagaggaagagcaaggagatcttgacaatgtatctcatgcgtccatgacg
gctgacagtgatcgaaatgagactttgcttccatttaacatccaattgccatttcgttcc
acctctccacgtgtgtccctgcaggcaatgaaagacagtgtcactagctttgtgagaaaa
accactgagaaaattggaacccttcacatgaatcctgatatcagaatgcggcaagaggtg
aaggaagatgaccgactccttgatgtgcctgtcaatgacatgtcccaaccagaggaggaa
aagaacgaggtagactcccatccgccgtcctgtgaggaagtcagcctgggagagttaaaa
ctgtcaacagccgcagctatatcaaaaatccaagatcctgaggttttgtttgacccagag
gccatggtaataatcttaaacacgtggctcccgtacctggaaaaagcttttagtccccag
gctgacccctctgaccaagattcagatggtgaagtgccaactacaagctcatcctgtaat
aatgaggacggagaagaaggagatttcaggccagaattggggatgacaaaggacgaggga
agagcgcagactgacttgactaaaacggagcaccctgttatatttcacgtgactgctcca
tttcccatagaggagtctcttcgtcgggacctgtccagccttgccatgctctgtctggaa
ttcaaagttttcacagatggaaaggatccattgccctcagatctcggttcttctgcctgc
cactttatacagagttactttttccttttagaccttaagagactaaaacgttgtatagct
ctccagtacactgactgcccaacagtctgggatacctacgtgcaagggctgcaagatctg
acgagttctactccagtggctggagcaatagccagtgaggctctggtgagcgtgatcaag
ttattaagtgatgaagagccgtgggatagtcctctgctgctcgctcatgcctgcaggatg
tatgagaagtttggggaaaccgcagtccggtctttgataaggttctacccttccattctg
cccctggatgtcatgcagctctgccgtggaaatcaaaggcacttccttgcttatctggac
agccttattaaatcaaaaccagtggatcaaaggtcatctctgctacagtcgcttgttcag
ccagaatctctcaaaatggattggcttttgctggctgtttcccatgatgctccacaaacc
agcaacactttggatccggaaggaaatcccaagccaaattctcatctgtttacctggggt
tatggacctttaattgatctgttaataaaacttccggcagattacgaaacaaaacagaag
atgtccacagtctgtaggacctttggatactggcggggatatgtgtctttgtgtttggag
ctggacagaaggacagaagccctgacaaacattgtgttccttgatgatctgagtcttatc
gatgaagtcagtggtgtcataccagagaccatggatgaatggaaattaattcttcagcta
gcaaaaagccacgattcttatcctcattctcacgatcaccaccagcatcaaaatggcaca
gagaatgggagttcagtaagtaacgggcacacggactggcctaactgcatcacagtggag
aatgtggccctccttctgatgaaggtgatagggaccgagcgtgcctggccatatctgcag
gaatggggtgcgactgagagcttctctgacagatacaccaaggtttgcgatatcatgaaa
gtggctgagaaaagacagagagcactgatccagtctatgttggagagatgtgagacgttc
ctgtggtcacagcaagcataa
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