Xenopus laevis (African clawed frog): 108718299
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Entry
108718299 CDS
T01010
Symbol
hmbox1.S
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108718299 (hmbox1.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108718299 (hmbox1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
DUF494
AbiJ_NTD3
HTH_37
HTH_31
HTH_23
CUT
HTH_26
HTH_24
NOC3p
Motif
Other DBs
NCBI-GeneID:
108718299
NCBI-ProteinID:
XP_018121511
Xenbase:
XB-GENE-6078482
UniProt:
A0A1L8G5A7
A0A974CSX3
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Position
5S:complement(138223260..138270094)
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AA seq
422 aa
AA seq
DB search
MRPSADSSAVSPTETMSHYTDEPRFTIEQIDLLQRLRRTGMTKNEILHALETLERLDQEH
SDKFSRRSTYGTGSYSNNNVPASSSTATASTQTLHCGMSPSPSNSCDTSPQPCTTNQNGR
ESSERVATSNGKLSPTRYHANSIGPRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKA
FLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMR
PAPIPIDTDAEWRQTPPPVTATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKRE
EIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSP
GGHSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGTGEIKTEALD
DD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccttcagctgacagcagtgctgtgagccctacagaaaccatgtcacattacaca
gatgaacctcgatttacaatagagcagatagacctcctacagcggctgcgacgcacggga
atgaccaagaatgagattctccatgcgctggagacgttagagcggctcgaccaagagcac
agtgataaattcagcaggaggtccacctacgggacaggttcctacagcaacaacaatgtt
ccagcctcttcctctacagccaccgcttccacccagacccttcattgtgggatgtctccc
tccccaagcaacagttgcgacacctccccacaaccttgcactaccaatcagaacgggagg
gagagcagcgagagggtggccacgtccaatggcaagttgtctccaacgcggtatcatgca
aatagcatcggcccaaggtcgtacagcttcgaagcctcggaggaagatctagatgtggat
gacaaagtggaggaactgatgaggagggacagcagtgtcatcaaagaagaaatcaaggcg
tttcttgccaacagaagaatatcccaggccgttgttgcacaagtgactggtatcagtcag
agcaggatctctcactggctgctgcagcaaggctccgacctgagtgagcagaagaaaagg
gcgttttaccgatggtaccagctggagaagaccaaccctggtgcaacactaagtatgaga
cccgcccctatccccatagacacagacgcagagtggagacagaccccgcctcctgtcacc
gctacttctggtacctttagattacggaggggaagccgctttacctggaggaaggagtgc
ttggctgtgatggaaagctattttaatgagaaccagtacccggacgaggccaagcgcgag
gagattgcaaacgcctgcaatgctgttatacagaaaccaggcaagaagctgtcggatctg
gagcgagtcacctcactgaaagtgtacaactggtttgctaataggaggaaggagataaaa
agacgagccaacattgaagcagcaatcctagagagtcatgggattgacgtacagagtccc
gggggtcattcaaacagcgacgatgtggatggaaacgattattctgaacaggacgacagt
acgagccatagcgaccatcaagacccaatctcattagcggtggagatggcagccgtcaat
cacaccatcttggcactggcccggcaaggcaccggcgagatcaagacagaagctctggac
gacgactga
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