Xenopus laevis (African clawed frog): 108718838
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Entry
108718838 CDS
T01010
Symbol
vps50.L
Name
(RefSeq) syndetin isoform X2
KO
K23288
syndetin
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108718838 (vps50.L)
Membrane trafficking [BR:
xla04131
]
Protein recycling
Others
EARP complex
108718838 (vps50.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DcpS_C
Motif
Other DBs
NCBI-GeneID:
108718838
NCBI-ProteinID:
XP_018122802
Xenbase:
XB-GENE-6489378
UniProt:
A0A1L8FVT7
A0A974CN39
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Position
6L:32027108..32151018
Genome browser
AA seq
964 aa
AA seq
DB search
MQKIKSLMTRQGSKSPQDSFHDLSPIENLRTPTKEELRELRERATDPQKQQELINSIEDI
YFSSDSFDIVKYELEKLPPVLNLQEVEEYRDKLKHQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNGRRHLNVAKEGFTQASLGLLANQRKRQQLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFRHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFEVAHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLPYKDLCMHITSDSYIPCLSDLCKALWEVMLSYFRTMEWHEKYEREISPLTPDM
NNVSGTEDTNFDRSYIKKKLEHGLSRIWQDVQLKVKTYLLGTDMSNFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEALQESIRKQSVNYFKNYHRTRLEELRMFLENETWELCPVKSSFSI
LQLHEFKCLGQSRSPSMSPSKQTSSAESAAVSLFEQYTNGGNPFEIQAAIKDDDTEDVLA
ANGYESDELEKSAYQEYDSDSDVPEELKRDYIDEQTGDAPTKSVSRETLKSRKRSDYSLN
KANAPILTNTTLNVIRLVGKYMQMMTILKPIAFDVIHCMSQLFDYYLYAVYTFFGRNDAY
ESTGLGLSSSRLRTTLNRIQESLIDMEVSGENVGSLVSSEERKEKVPSPHLSHMVILTNS
GTLYGLSERVVATESLVFLAEQFEFLQTHLDSVMPAAKKPFLQQFYSQTVSTASELRKPI
YWIVAAKAIDYEQLLLLMANVKWDVKEIMSQHNLYVDALLKEFEQFNKKLSELSKHVRIP
LPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDYQQFLMKLEKLTDIRPIPDK
EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLSAIDDTD
RPKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcactaatgacccgccagggctctaaaagtccacaggacagtttc
catgaccttagtccaattgagaacttgcggacgcctacaaaggaggagctacgagaacta
cgcgaaagggccacagatccccaaaaacaacaggagttaattaacagcatcgaagatata
tatttttccagtgactcttttgatattgtaaaatatgagcttgagaaactaccccctgtt
ctcaatcttcaggaagtggaagaatacagagacaaactgaagcaccagcaagctgcagta
tcaaagaaagttgcggatctgattcttgaaaaacaacctgcatatgtcaaggaactggaa
cgtgttacatcactacagacaggccttcagctagctgctgtgatttgcactaatggaaga
aggcaccttaatgtggcaaaggaaggatttactcaagctagcctggggcttcttgcaaac
caaaggaaaaggcagcagttgattggcctactgaagtctctgagaacaattaaaacactg
caaagaacagatgttcgcctaagtgaaatgcttgaggaggaggactatcctggagccatt
cagctttgtttggagtgccagaaggcagctagcacctttagacactacagttgtataagt
gaattgaactcaaaactgcaagatactctagaacaaattgaggaacaactagatgttgct
ctctcaaagatttgcaagaacttcgaagttgctcactacaccaaagtgcagcaagcttac
agactcctgggcaaaacacagactgccatggatcaactgcacatgcacttcacacaagcc
atccataatacagtgtttcaagtagttctcggatacgtggaattgtgtgctggaaacaca
gatacaaaattccagaaacttccatacaaagacctttgcatgcatataacctcagacagc
tacattccctgcctctctgacctctgcaaagcactctgggaagttatgctaagttacttt
cgaactatggaatggcatgagaaatatgagcgtgaaatatcaccactaacacctgacatg
aacaatgtcagtggaacagaagataccaactttgatcgaagttatataaaaaagaaattg
gagcatggactgtctcgcatatggcaggatgttcaactaaaagtcaaaacgtatcttctt
ggaacggacatgtccaacttcaaatatgatgattttatctttgttttagatataatcagc
aggttaatgcaggttggggaagagttttgcgggagtaaatctgaggctttacaggagtcc
attagaaaacaaagtgtcaactactttaaaaattatcacagaacgcgcctcgaagaacta
agaatgttccttgaaaatgagacctgggaactttgtcctgtcaagtcaagttttagcatc
ttacaactacatgaattcaaatgcttgggacagtctcgctccccttctatgtcgccaagt
aagcaaacctcttccgctgaatcggcagcagtgtcattatttgaacagtacacaaatgga
ggaaatccctttgagatacaggctgctataaaagatgatgacacagaggatgttcttgct
gcaaatgggtatgaatcagatgagctagaaaagagtgcttatcaggaatatgatagtgat
agtgatgtccctgaagaactgaaaagagattatattgatgagcaaacaggagatgctccc
acaaaaagtgtttcaagggaaactctgaagagcagaaagagatcagattatagtttgaac
aaggccaatgcaccgattttaaccaacactacactgaatgtaataagacttgtcgggaaa
tatatgcaaatgatgacaatattgaaaccaattgcatttgatgtcatccactgcatgtcg
cagctgtttgattactacttgtatgcggtgtatactttctttggaaggaatgatgcgtac
gaatccacaggccttggtctcagcagcagcagacttagaacaacactcaaccgaattcaa
gaaagtctgatagacatggaagtgtctggtgaaaacgttggctcattggtttcttctgaa
gaaagaaaggagaaagtgccaagtccacaccttagccacatggtcattttaacaaacagt
ggtacattgtatggtctctcggaaagagttgtggctactgaatccttagttttcttggct
gaacaatttgaatttctccagacacatcttgattctgtgatgccagcagctaaaaagcct
tttcttcagcagttctactctcagactgtatctacagccagtgaactccgtaagcccatt
tactggatcgttgctgccaaagctatcgactatgagcaattactgcttcttatggccaat
gtgaaatgggatgtaaaagaaatcatgtcacaacataacctatatgttgacgctcttttg
aaggaatttgaacagtttaataagaagctatctgagctttccaaacatgtccggatacct
ttgccggtttccaatattctttgggagcactgcattcgtcttgcaaatagaacactggtg
gaaggttatgccaacgtgaagaagtgcagcaacgagggccgggctctaatgcagctggat
tatcagcagtttctaatgaaacttgaaaaactgacagacatcaggccaattcctgataag
gagtttgtggagacttatattaaggcctattacttaactgaaaatgacatggaacgctgg
atcaaagagcacagggaatactcaaccaagcagctgacaaacctggtgaatgtttgcctt
ggatcccatatcaataaaaaggccaggcagaagcttctctccgctatcgatgatactgac
aggccgaaaagatag
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