Xenopus laevis (African clawed frog): 108719222
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Entry
108719222 CDS
T01010
Symbol
npc1.L
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
xla04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
108719222 (npc1.L)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108719222 (npc1.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xla02000
]
108719222 (npc1.L)
Transporters [BR:
xla02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
108719222 (npc1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
108719222
NCBI-ProteinID:
XP_018123432
Xenbase:
XB-GENE-6486214
UniProt:
A0A974HGI5
A0A1L8FYQ3
LinkDB
All DBs
Position
6L:complement(116021662..116068069)
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AA seq
1283 aa
AA seq
DB search
MFAWKDQSLISLFFLTALCFPQQVSCQHCVWYGECGKSSIEGKRLNCAYSGPPISLPEEG
HALLQQLCPSLSYGNNTVCCDVQQLNTLNSNLQLPLQFLSRCPSCFYNFMTMFCELTCSP
RQSEFLNVTNTEPYVDPSPQRANESIVAMEYYIGERFANAMYNACMNVEAPSSNVKALAL
LCGKDVKDCNATNWIQYMFNKDNGQVPFTITPIFSDDPVTSMLPMNNDTKSCNESVEDDG
APCSCQDCALTCGPVPQPPSLPPPWRIFGLDAMAVIMWIVYVVFLLLFSAVIIGSWCYRK
KNIVSEYAPIDSNLAYSVNSTPIAGEPSCCDRLGERLENFLRIGFTKWGSFCVRKPWIVI
FFSVLLIVICCFGLKYMKIITDPVELWSDPHSQARQEKEYFDSHFGPFFRTEQLIITAPN
SSVHIYSPYPSGSDVPFGPPLAFDMLTQVLELQDGIENLKAYYNNETVMLKDICLAPLAP
YNNNCTIFSVLNYFQNSFSVLNHSIQDDFYVYADYHTHFLYCVRSPASLNDTSVLHDPCL
GTFGGPIFPWLVLGGYDDENYNNATALVVTFPVINFSNDTEKLNRAKAWELEFIKFVENY
SNPNLSISFSAERSIEDEINRESKSDVTTVVISYALMFVYISLALGQIGDCSRILVDSKV
SLGVAGILIVLSSVACSLGIFSYAGVSLTLIVIEVIPFLVLAVGVDNIYIIVQRYQRDER
LHDETLDQQIGRILGDVAPSIFLSAFAETVAFFLGALSSMPAVRTFSLFAGMAVFIDFLL
QITCFVSLLSLDIRRQEKNRLDILCCVPGCNRNRGTDKPKSWLFIFFKKFYAPVLMKDWI
RPIVVSVFVGILSFSIAVVNKVEIGLDQSLSMPDDSYMLDYFGSLSKYLHTGPPVYFVVE
EGHNYTTKEGQAMVCGGAGCNNNSLVQEIYTAAGISNYTKIGYAPSSWIDDYFDWVKPQS
TCCRLYNDTEQFCNASVVNPSCMSCRPYTPEGKRKPVGEDFMKYLPMFLSDNPNPKCGKG
GHAAYSSAVDLLDQNTDVGATYFMTYHTILKNSTDFIDAMRKARMIAQNITDNMDIPEKK
YKVFPYSIFYVFYEQYLTIVDDTIFNLCVSLAAVFIVTVILLGFEFWSAVLMCITISMIL
VNMFGVMWLWNISLNAVSLVNLVMCCGISVEFCSHVTRAFSVSTRGNRVQRAEDALAHMG
SSVFSGITLTKFVGIGVLGLSKSQIFKIFYFRMYLAMVLLGAAHGLIFLPVLLSYLGPQV
NKAKVQAALQRVRGTEQERLFNH
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcttggaaggaccagtccctgatatctctctttttcctaacagccctatgtttt
cctcagcaggtatcttgccaacactgtgtctggtatggggagtgtggcaaatcatcaata
gaaggtaaacgattaaactgcgcatactctgggcctcctatctccctgcctgaggaagga
catgcactgctgcagcaactttgcccatcactttcttatggaaataacactgtctgctgt
gatgtccagcaactcaacaccctcaacagcaatcttcagcttcctttgcagttcctttca
agatgcccttcttgtttttataatttcatgaccatgttttgtgagctgacctgcagtccc
cgccagtcagagtttctgaatgttaccaacactgaaccatatgtcgaccctagccctcaa
agggcaaatgaaagcattgttgccatggagtattacataggagaaagattcgctaatgcg
atgtacaatgcgtgcatgaatgtagaagctccctcgagtaatgtcaaggctttggctttg
ctgtgtggaaaggatgtcaaggactgtaatgctactaattggattcagtacatgttcaac
aaagataatgggcaggttccttttaccatcactcctatcttttcagatgatcctgtgact
tccatgcttcccatgaacaacgacaccaagagttgcaatgagtccgtggaagacgacggg
gctccttgcagttgtcaggattgtgctcttacttgtggccctgtgcctcagcctccatca
ctgcctcctccatggcgtatctttggcttggatgctatggctgtcattatgtggatagtt
tatgttgtgttcttactactcttttctgcagtcattattggatcatggtgttacaggaaa
aagaatatcgtctcagaatatgctcccattgatagcaatttagcatattctgtcaattcc
actccaattgcaggagagccatcatgctgtgatcgacttggtgaaagacttgagaacttt
ctgcggattggatttacaaaatggggttcattttgtgttcggaaaccatggatcgttatc
tttttttctgtgcttctaattgtaatatgttgctttggcctcaagtacatgaagattatt
actgatcctgttgaattgtggtcagatcctcacagccaggcccgacaagagaaggaatat
tttgattctcactttggccctttcttccgcactgaacaactgatcatcactgcgcccaac
agttcagtgcacatttactcaccatatccctctggcagtgatgtgccctttggcccacct
ctagcatttgatatgcttactcaggtcttggagctgcaagatgggattgaaaacctaaaa
gcctattacaataatgagactgtaatgttaaaagacatctgtttggctccattggccccg
tacaacaacaactgcacaattttcagtgtgctcaactatttccagaatagcttctctgtg
ttgaatcattccatacaggatgatttctatgtttatgctgattaccacactcacttctta
tattgtgtgcgatccccagcatctttgaatgacacatcagtactccatgatccctgtctg
ggtacatttggtggtcccatctttccatggctggtgcttggaggatatgatgatgaaaat
tataacaatgccactgccctggttgtgacctttcccgtgattaatttcagcaatgacaca
gaaaaattgaacagagcaaaggcttgggagttggagttcatcaaatttgtggaaaactat
agcaatcccaatctgtctatttcattctctgccgagagaagcatcgaagatgagataaac
cgtgaaagcaaaagtgatgttactacggttgttatcagctatgcattaatgtttgtctat
atatccttggctctgggtcagattggcgactgcagtaggatcttggtggactctaaggtc
tcgctgggagttgctggcattctgattgtgctcagttcagtagcctgctctctgggcatc
tttagctatgctggtgtgtcactcactcttattgtcatcgaggtgatcccatttctggtg
ctagctgttggagtagacaatatatacattattgtgcagagatatcagagagatgagcgc
cttcatgacgagactctggaccagcagattggcagaattctgggagatgttgctccaagt
atatttctgtccgctttcgctgaaaccgttgcattttttctaggggcattgtcatccatg
ccagcagtgcggacattttcactctttgccgggatggctgtgtttatagacttccttctt
cagatcacctgctttgtcagccttcttagtctggacatcagacgacaagagaaaaatcgt
ttagatatcctttgctgtgtccctggctgtaacagaaaccgtggcactgacaaaccgaag
agctggctttttatattctttaaaaagttttatgccccagtactgatgaaggattggata
agacctattgtggtatccgtttttgttggaatcctgtcctttagcattgccgttgtcaat
aaagtggaaataggtcttgatcaatctctctccatgcctgatgattcctacatgctagat
tattttgggtcactcagcaaatacctacatactggacctccagtgtattttgtggttgaa
gaaggacataattatactacaaaggaaggacaagccatggtgtgtggtggagctggatgc
aataacaattcactggtgcaagagatctacaccgctgctgggataagcaactatacaaag
attggatacgcaccttcctcttggatcgacgattactttgattgggtaaagccacagtct
acttgctgtcgattatataatgatacagaacaattctgcaatgcttcagtggttaatcca
tcctgcatgtcatgccggccctacactccagaaggaaagcgcaaaccagttggagaggat
tttatgaagtatttacccatgtttctctctgataatccaaaccccaaatgtggaaaaggg
ggccatgcagcatatagctccgcagttgatcttcttgaccagaacactgatgttggtgcg
acttactttatgacctatcatacaattctgaaaaactccacagactttattgacgctatg
aggaaagcccgtatgattgcacagaacattactgataatatggacatcccagagaagaaa
tacaaagtattcccttacagtattttctatgtattttatgagcagtatttaaccattgtg
gatgacaccatcttcaacttgtgcgtgtctctggcagcagtattcattgtgacagtgatc
cttctaggctttgagttctggtcagccgtcctcatgtgcatcacgatttctatgatactt
gtcaacatgtttggggtcatgtggctctggaacatcagcttaaatgcagtgtcccttgtc
aatttggtcatgtgctgtggcatatcagtggagttctgcagccacgtgaccagagctttt
tcagtcagcacaaggggaaaccgggtacaacgtgccgaagatgccctggctcatatgggt
agctcggtgttcagcggtatcacactcacaaagtttgttggtatcggcgtgcttggcttg
tccaaatcccagatattcaagatcttctacttcagaatgtatctggctatggtgcttctt
ggggcggcacatggcttaatatttctgcctgttctccttagttacttaggcccgcaagtg
aataaagcgaaggtgcaagctgcgctgcagagagtccgaggcacagaacaagaacgtctc
tttaaccattga
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integrated database retrieval system
