Xenopus laevis (African clawed frog): 108719602
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Entry
108719602 CDS
T01010
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108719602
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108719602
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108719602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108719602
NCBI-ProteinID:
XP_041445165
UniProt:
A0A8J1MVX6
LinkDB
All DBs
Position
1L:53336618..53405746
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AA seq
1726 aa
AA seq
DB search
MATQGSNFGEKSLGSQQELDPETSKSRDPEAQNNTESQVKSAEFLHDMYIFVMGTLSRAI
HASLLNDYVESEFFLIDGDSLLLTCVLDQSLILGQHLHFFYLVESYLLKLTNRGAKYAVV
FFEDMKFFYHSRADLLSLRTQMKLHLEHNTDTVIYTFSNFLSAQWNTFLTDHHPYFLMVC
DEGITLSQTYFFSMLMLSALRRKVDLVLTSGQEFDQLRIYGYHISASRHKVWAIKNQTNI
LLALVDPCAKLYGERVQKLNSSNTKKEIKKSITFLFNKGCEVTDIRTIMCIVSCNAVLSE
YGENAKSNTTQGDFQDSEDNSDLTLEEVADLCRMYCLSVAISQVLPLSQRMKSRNISADW
NTPVLACLDLRSICEHIGLVHVKMFPKVSDWKINWTHIADLTDGLLLKNIAYYFEKENNS
GPKSIFGKTIQEKYSFLWNSILEINSHSEQIQSYEVRTTARPFLSEASSIIVIEENIPTI
GLLQAKCDIVEEYVGDMLDELPLLSSTDQKSIPHGKYFDELLHWHSGRPLSDDYDRTKGG
DKALKDKRSLRLYQKLQTFQHFSGQSLVSSSSKTIVVQNKESEKKGEKQKVVVKKKQTQK
SKKDLIIEENQKRMNSKEENKEVEQWKSISSSIEKQIKANIFPGLKNLEDFIENTQSKSV
KLLAELSGLRISFEVWVEHCYTHKKEKDLNIAVEIMKKIQTIHNKYQDMLTKEDEQVVAK
CLSYLGFENLALPCSKVTSAREDKKKAECSVGLGASRFQLQFMGPYLLRDERTDPDPRVQ
HFIPDTWQRKLLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLSQDNEGVIVYVSPTKAL
VNQVVTTVMNQFNKTLPNGVALCGVFTRDYRTDALNCQILVTVPQCLEILLLSPHRQEWA
KKIKYIIFDEIHCLGGEIGAEVWEHLLVMIRCPFLALSATISNPEHLTEWLQSVKHYWER
RDKLLEKTHTEKGGKAKAYKKTEKMSYRVHLVLYDKRYNDLEKYLCSVQDSGVSFAHYHP
CAALTMDHMEKYGIPNDLSCSPRESLQLYDTMVNMWPEWSRRQELDPEEYTHFKDKVIIT
KNDTKVYEEELKKELLEWIKQGNGDKTSQVLQSLQPPKCYTNVKGTYHFPMLVEKLKEEQ
KLPALFFEFDIGLVKHLALEAAMFLELKQEEKPKLLTEKEAEKFNKKAKRLEKEIVKNKS
KISNKSSYENDDFLNNTANYDSIKQLLRKDDEIPPDCTYADSKALNSEVLTDIFERTSGS
RSAEELKTLALRGIGYHHSSLDAKGRGQVEMLFRMGYLRVVTATGTLALGINMPCKSVVF
VHDSVYLDALNYRQMSGRAGRRGQDVLGNVYFFTVPLPKVKRLMKSNVPHLKGQFPLSIS
LVLRLMLLAAKADDKEDARVKALSVMKHSLMAFKRPSETKMLKLYFLFCIHFLIHEGYLD
QTCNPLDWTGLVTHLNYHEPSNFVFVSFLEKGLFHRLCQVESKGSNIFPQSVMETLMLVL
ANLFGRRYLTPSIRKLKGTFKQSKVFLESLPDDFAAALQDYNSKISTVFGQYLLAVSHLA
NYEQEYKLPLSQINFSGEEYKDSELVNHLMNCTTRRSAISPFACLSGNTDHDLLFAENVN
SLLLQTVQVSQKHIPVLHLEKTDACGRKLSLNAYALDFFKHGSFDALQEDNRINRGAAFY
ILKDFSLCIAAISISLKEMCEDEDDPVVLAFEQLNTMFNKKLNYTY
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atggctacacaaggatctaattttggtgagaagtcactgggctcccaacaagaactggat
cctgaaacttctaaatcacgtgacccagaagcacagaataataccgaatcccaggtgaaa
agtgctgaattcctccatgacatgtacatatttgtaatgggcacactttcaagagctatc
catgccagtctgctcaatgattatgtggaatctgaattcttcttgattgatggagattcc
ttactgctaacttgtgttttggatcagtcattgatattaggacagcatctgcatttcttc
tacttggtagagtcgtacttgcttaaactgaccaaccgaggagcaaaatatgctgttgtg
ttttttgaggatatgaagtttttctaccatagcagagctgaccttctctctctacggacc
caaatgaaactacacttggaacataatacagacacagtcatatacactttttccaacttt
ttgtctgctcagtggaacacatttttgactgatcaccatccctattttctaatggtttgt
gacgaaggcataactctttcccaaacatatttcttcagtatgcttatgctaagtgccctg
agaagaaaagtagacctcgtgctcacttcaggacaagagtttgatcagctccgaatatat
ggataccatatcagtgcttcccgccataaagtatgggcaataaaaaatcaaacgaacatt
ctactagctcttgttgatccatgtgcaaagttgtatggggagcgtgtgcagaagttgaat
tccagtaacaccaaaaaagagatcaaaaagagtataacgttcctttttaacaaaggatgt
gaagttacggacataagaaccataatgtgcattgtgtcctgcaatgcagttctgtcagag
tatggggaaaatgcaaaaagcaacacaacacaaggagattttcaggattcagaggataac
agtgacctgacattggaagaagtggctgacctatgcagaatgtactgtctgagtgtggcc
atatcacaggttttgcctctttcccagagaatgaaatctaggaatatcagtgcagattgg
aacacccctgtattagcatgtttagatttgagaagtatatgtgagcacattggtctggtc
catgtgaagatgtttccaaaagtctcagactggaagataaattggacacatattgctgac
ttaacagatggcttgctgttaaaaaatattgcatactactttgaaaaagaaaacaattca
ggcccaaagtcgatatttgggaagacaatacaggagaagtattcctttctctggaactcc
atcttggaaataaattcacatagtgaacaaatacaatcctatgaagtcagaacaacagca
cgtcctttcctttcagaagcttcctcaataatagtgatagaggagaacatacctactata
ggtctcctacaagcaaaatgtgacattgttgaggagtatgttggggacatgctggatgaa
ctcccgttattaagcagtactgatcaaaaatcaatccctcatgggaaatatttcgatgaa
cttttacactggcattctggacgtccactgagtgatgactatgacagaacaaagggaggt
gataaagcattgaaagataaacgttctctcagactttatcaaaagctacagacctttcaa
cattttagtggccaatctttagtctcctcttcatccaagacaattgtagtacagaacaaa
gaatctgagaaaaagggggagaaacaaaaggttgttgtgaagaaaaaacaaacacagaag
tccaaaaaagatctaatcattgaagaaaatcagaagagaatgaattccaaagaagaaaat
aaagaagttgaacagtggaaatcgatttcatcttcaattgaaaagcaaataaaagcaaac
atttttcctggcttaaaaaacctggaagatttcattgagaatacccaaagcaaatcagtg
aagcttcttgcagaactatcaggattaagaatttcctttgaggtctgggttgaacactgc
tacacacataaaaaggagaaagatttaaatattgctgtggaaatcatgaagaaaatacag
acaattcataataaataccaggacatgttgactaaagaggatgaacaagtagtagctaaa
tgtctcagttatctgggatttgagaacttggcattgccttgctctaaggtaaccagtgct
cgagaggacaagaagaaggctgagtgctcggttggacttggagcatctcgcttccagttg
cagttcatgggtccatacttgttaagagatgagaggacagatcctgatccaagagtacaa
cactttataccagacacgtggcagcgaaagcttcttgatgttgttgacaataatgagtct
gcggtgatagttgcccctacatcttcaggaaagacttatgcttcgtactactgcatggag
aaagtactgagtcaagacaatgaaggcgtgattgtgtatgtttcaccaacaaaggctctt
gtaaaccaggtggtaaccactgtaatgaatcagtttaacaaaactttgcccaatggagtt
gctctgtgtggagtattcacaagggattaccgtactgatgcactaaattgccagatattg
gtaacagtgcctcagtgtcttgagattcttctcctgtctccacatcgtcaggaatgggct
aaaaagattaaatatatcatatttgatgagattcattgcctggggggagaaattggtgca
gaagtatgggaacatcttctagtgatgattcgttgtccatttcttgctttgtctgcaacg
ataagtaacccagaacacctaactgaatggctgcaatcggtaaaacattactgggaaaga
agagataagttgttagagaagacacacactgagaaaggaggaaaggcgaaagcttataag
aagacagaaaaaatgtcttacagagttcatctggtgctttatgacaagagatacaatgat
ctggaaaaatatttgtgctctgtgcaggattctggtgtatcttttgcgcactatcaccca
tgtgctgccttaaccatggatcatatggagaaatatggaattccaaatgacttgtcctgc
tctccaagggaaagtttacaactgtatgacactatggtgaatatgtggcctgaatggtca
agaagacaggaactggatccggaagaatacacacatttcaaggacaaagtcatcataaca
aaaaacgatacaaaagtatatgaggaggaattaaagaaagaattacttgaatggattaag
caaggaaacggggacaagacttcccaagtgcttcagagtctccagccaccaaaatgttat
actaatgtgaaaggcacttaccactttccaatgcttgttgaaaaactgaaagaagagcaa
aagctgccagcacttttttttgaatttgacattggacttgtgaaacatcttgcattggaa
gcagccatgtttttggaactgaaacaggaagaaaagccaaagctactgactgagaaagag
gctgaaaaatttaacaaaaaagccaaaagattggaaaaagaaatagtgaaaaataagtct
aaaataagtaataaatcctcttatgaaaatgatgattttttaaacaacactgccaattat
gacagtataaagcaattgcttaggaaggatgatgaaatcccaccagattgtacttacgct
gatagcaaagccctgaacagtgaggtactcacagacatatttgaacgaaccagtgggtca
agatctgcagaggagttgaagactctggcactaaggggtataggctaccatcattcctct
ttagatgctaaaggaagaggtcaagttgaaatgctcttcaggatgggatacctgcgtgtt
gttactgcaacaggaactcttgccttgggaatcaacatgccgtgtaaatctgttgtgttt
gtccatgactctgtttacctggatgcactaaattacagacagatgtcaggacgcgcagga
aggcgaggccaggatgtgctgggaaatgtatacttttttactgttcccttgcctaaagta
aagcgacttatgaaatcaaatgtccctcatttgaagggacaattcccattaagcatctct
ttggtgctacgactgatgctgttggctgccaaggctgatgataaagaagatgctagagtt
aaggcattgtcagtaatgaagcactccctgatggcatttaagagaccttctgaaaccaaa
atgttaaagctctacttcctgttctgcatacacttcttaatccatgagggctatttggat
caaacctgcaatcctttagactggactggactggtcacccatttaaattaccatgaaccg
tcaaattttgtttttgtcagtttccttgaaaagggtttatttcaccggctgtgccaagta
gaatctaaaggttcaaatatttttccacaatctgtgatggaaaccctgatgctggttttg
gcaaacctgtttggaagaagataccttactccttctattcgaaaattaaagggcacattt
aaacagtcaaaggtctttctggaaagtctaccagatgattttgctgcagctcttcaagac
tacaattctaaaatatcaacagtctttgggcagtatcttcttgctgtttctcatctggca
aattatgaacaagaatacaagcttcctttatcccaaatcaacttctctggggaagaatat
aaggattctgaacttgtaaaccatctaatgaattgcaccacaagaagaagtgccatatcc
ccttttgcctgtctgtctggaaatacggatcatgacttactttttgcagaaaatgtgaac
agtctcttattgcaaactgttcaagtgagccaaaaacacattcctgtgctgcatttagag
aaaacagatgcttgtggtagaaaactgtcacttaacgcctatgcactggatttctttaag
cacggctcctttgatgcactacaagaagataacaggattaacagaggagctgccttttac
attttaaaagatttttctttatgcattgccgctataagcatctctctgaaagaaatgtgt
gaagatgaggatgatcctgttgtgttagcttttgagcagctgaatacgatgttcaataag
aaactaaactatacttactaa
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