Xenopus laevis (African clawed frog): 108719826
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Entry
108719826 CDS
T01010
Symbol
shh.S
Name
(RefSeq) sonic hedgehog protein-like isoform X1
KO
K11988
sonic hedgehog
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108719826 (shh.S)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xla01002
]
108719826 (shh.S)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108719826 (shh.S)
Peptidases and inhibitors [BR:
xla01002
]
Cysteine peptidases
Family C46: hedgehog family
108719826 (shh.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Morphogens
108719826 (shh.S)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
DUF6212
Hint_2
DUF7764
Motif
Other DBs
NCBI-GeneID:
108719826
NCBI-ProteinID:
XP_018124514
Xenbase:
XB-GENE-17341047
UniProt:
A0A1L8FQM4
A0A974CI96
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Position
6S:complement(11141476..11159343)
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AA seq
429 aa
AA seq
DB search
MSVATGILLLGFTCSLLIPPGLSCGPGRGIGKRRHPKKLTPLVYKQFIPNVAEKTLGASG
RYEGKIASNSDRFKELTPNYNPDIVFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
KLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPAGAEVMVELGGTKAVKDLRPGDRVLSSDAQGNLLYSDFLL
FIDQQHDVKKLFYVIETSHPRRRIRLTAAHLLFVAQVNGSRSFKSVFASSIQPGDIIYSA
DPRAMALNEVKVEKVGLEEDTGAYAPLTAHGTLVIDQVLSSCYALIEEHTWAHLAFAPLR
FGLSLSPYLFPKDSSPSPQSHHQLDSSPSPQSHHQPEGIHWYSQLLYQLGTWLLDSNSLH
PLGMATKSS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgcgactggaattctgctgttgggcttcacctgttccctgctgatccccccc
gggttgtcctgtggacctggcagaggaattggcaagaggagacaccccaagaaactcacc
cctctcgtctacaaacagtttatccccaacgtggcggagaagaccctgggggccagcggc
agatacgaaggaaagatcgcgagcaactcggatcgctttaaagaattgacccccaattat
aacccagatattgtatttaaagacgaggagaacacgggggcggaccggctcatgactcag
agatgtaaagacaaactgaacgcactcgcaatctccgtgatgaaccagtggccgggggtg
aagctgcgggtgacggaggggtgggatgaggacgggcaccacttggaggagtcgttacat
tatgaggggagggcagtggacatcaccacgtcggaccgggaccgcagtaaatacggaatg
ttggcccgactggcggtggaggccgggttcgactgggtctattacgagtccaaagctcat
attcactgttcggtcaaagcagagaactcagtggcggccaagtctggtggttgtttccct
gctggtgccgaggtgatggtggaacttggtggcaccaaagcggtgaaagacctgcgcccg
ggggaccgcgtcctttcatctgacgcgcaagggaacctgctctacagcgacttcctcctg
ttcattgaccagcagcatgacgtcaagaagctcttttacgtcatcgaaacgtctcatcct
cggagaagaatcaggttgacggcggcccacctgctttttgtggctcaggtcaacggcagc
aggtctttcaagtctgtgtttgccagcagcatccaacctggagacatcatttattcagca
gatcccagggccatggccttaaacgaggtgaaggtggagaaggttggccttgaggaggac
actggagcttatgctcctctaactgcccatgggactctggttatagaccaggtgctgtcc
tcctgctatgcactcattgaggaacatacctgggcccacctggcattcgccccactcagg
tttggcttgagcctctccccttatctcttccccaaagactccagtccttcacctcaatct
caccaccaacttgactccagtccttcacctcaatctcaccaccaacctgaaggaatccac
tggtactcccagctcctttatcaactagggacttggcttctggacagcaactccctgcac
cccttgggaatggcaacgaaatccagttga
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