Xenopus laevis (African clawed frog): 108720110
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Entry
108720110 CDS
T01010
Symbol
nup153.S
Name
(RefSeq) nuclear pore complex protein Nup153-like
KO
K14296
nuclear pore complex protein Nup153
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108720110 (nup153.S)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108720110 (nup153.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108720110 (nup153.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108720110 (nup153.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
108720110
NCBI-ProteinID:
XP_018124988
Xenbase:
XB-GENE-17342626
UniProt:
A0A1L8FSD4
A0A974CKG7
LinkDB
All DBs
Position
6S:79436665..79487755
Genome browser
AA seq
1585 aa
AA seq
DB search
MAAAGGGEGPAGPGTGGKIRSRRYHLSSGRAPYSKSRQQQQGIISRVTDTVKSIVPGWLQ
KYFNKQEEERGRAHNASEVIVNDIEGRENNAEHHIYDEDEGNSAMDGRVTPEPIINVDEE
VPSTSRSAISDTDALARPSLHRASLNFNIFDSTALNCQPSTSTFPIGTSGFSLVKEIKDS
TSQHDDDNISTTSGFSSRASDKDVGLSKNVSMPPLWSPEVDRSQSLSHNSSMTSKKPSFN
LSAFSSLSPSLGNTSILNSQLGDSPFYPGKTTYQGAAAVRPSRVRSTPYQAPLRRQVKAK
PAHSQQYGVTSSAARRILQSLEKMSSPLTDAKRIPPGSSLSHTPEKSLVNIAENPSKRKK
VESPFPPVQRLVTPKSISVSSNRSLYIKPSLTPSAVSNTNSRRIQPDKHNESKKNYIQNV
QSTSQSHSFSYPKFSTPASNGLISATSGGKMMREKGSHYSTKPAHEELDLPVLPEIPLPL
STAALPSFTFSTLASTATSPISATKPADIATCVLTSSSPLFTFSSPIVKSTESNAQSPGS
PVDFTFSVPTVKVSSAISVESNVSAVSSIAKMHVAVNNGSTKNTDDEQVGFCKPAKTLKE
GSVLDILRSPGFSSSPSQVTSAFTPNRSTPTLTKTVGNTFSPAKVSLGVGSKQGLGLWQC
SACFHENMLSDSNCIACSAEASKKLPASPPSSNTKNTVPLSSEPGLGDLFKLPAGMWNCD
TCLVQNKAEVTKCVACETPKPGTSMKATLLIPSTTKAINPATNTLAFASSISNKDVCKKP
MGSWECTSCHMQNKTEDNTCVGCTAEKPGTIKSLSTAAPSGLLGMLDQFKKPAGSWDCDV
CLIQNKPEATRCVACESAKPGANAEMKGSFDTVRNSVSAAPLTSGQIGLLDQFKKSAGSW
DCDVCLVENKPEATKCVACESAKPGTKAELKGFGTSTFSSGTTAPTFKFGVKPSDSTGEL
KSGEATGPESGFSFAKPVGDFKFGLASASTTTEESGKKSFTFGSSTNNQVSAGFKFGVTS
SAQTKTDTLSQSSTSGFKFGSVSNTVSLAPAAISSGLQVAAANDDSNLAATAGLKSVQEK
KPEAPTTTPFTFGKTDQNKETVSTSFVFGKKDEQTDSAPSGQKKDGEEPKPFLFGKPGAA
KDGSTASAGFTFGVSNPTEKKDEQPGKSVFAFGAQTSTTDAGASKQPFSFLTSVSSTADS
SSTSGVSSSVFGSVTQSSSSVNPTNVFGSAISANVPAASTAVFGNLPPSNAPAAPSTLFG
NVAPSSTPSGSSALFGSTTSSSSPASSTSLFGSAAKLSAPVASGGVFNSAAPAAPASTSS
SVFGNAASSTNTSGNSVNIFGSSAGTSSAPGAFVFGQPASTASTVFGNSIESKSTFVFSG
QENKPVSSASTSVTPFLFGAASASTTPAAPSFNFGQTNASNVTGSSSSPFIFGTGSTGPA
SSSLTANPVPAFGQSANPSTAPAFGSSTLVFPAGNPQQVPAFGSSSSQPPVFGQQAAQPS
FGSSAAPSAGSGFQFGNNPNFNFTSTNSSSGVFTFNANSESTTQPPAPGFMFNAVTPGFN
KGTNGRTTPASSISNRKIRTARRRK
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagccggaggaggcgaaggaccagcaggaccgggaaccgggggcaagataagg
agtaggagatatcacttgagttccggcagggctccatacagcaagagccgacagcagcag
cagggtattatcagccgggtcacagatactgtcaagagcattgttcctggatggttgcag
aagtattttaacaaacaagaagaggaacgtggtcgagcacataatgcaagtgaagttatt
gtgaatgatattgagggcagagaaaataatgctgaacaccatatatatgatgaggatgaa
ggaaactctgccatggatggcagagtcacgcctgagccaattattaatgttgatgaagaa
gttccgtccactagtcggtcagcaataagcgacacagatgcccttgctaggccatcgtta
caccgtgctagtctaaacttcaacatatttgactctacggcactgaactgccagccatca
acatctacatttcctattggcacatctggcttctcgcttgtaaaagagatcaaggactct
acctcgcaacatgatgacgataacatctctaccaccagtgggttttcctctcgagcgtct
gataaggatgtaggactttcaaaaaatgtcagcatgccacctctttggtctcctgaagtt
gatcgctctcagtctttgtcccataactcctccatgacctctaaaaaaccaagttttaat
ctgtctgctttcagttctctgtcaccatctcttggaaacacatctatcttaaacagtcag
cttggggattctcctttttatcctggcaaaacaacatatcaaggtgcagctgcagtccgt
ccctcacgtgtgcgctccaccccatatcaagcacctttacgaagacaagtgaaagcaaaa
ccagcacactctcagcagtatggtgttaccagctctgctgcacgccgcattctacaatct
ttggagaagatgtctagtcctttgacggatgccaaaaggattccaccaggctcttcttta
tctcacacaccggagaaaagccttgtgaatattgccgaaaacccatcaaaaaggaaaaag
gtggagtccccatttcctcctgttcagagacttgtgactccaaaatccatttctgtatct
tcgaaccgttccctgtatatcaaaccttcactcacaccctctgctgtatcaaatacaaac
agtcggagaatacagccagacaagcacaatgagtccaaaaagaattatattcagaatgtg
caatcaacatctcagtctcacagtttttcttacccaaagttcagcactccagcatccaat
ggattgatatcagcaacaagtgggggcaaaatgatgagggaaaaaggctctcattactcg
acaaagccagctcatgaggagttggatctaccagttttacctgaaattccattgcctctt
agcacagcagcccttccaagctttacattttcaactttggctagtactgctacttcgcct
atctctgctactaaacctgcagacattgcgacatgtgtcttaaccagcagtagcccattg
ttcacattttcatcccctatcgtgaaatcaactgaatcaaatgctcaatctcctgggtca
cctgttgatttcactttcagtgtaccaacagtaaaagtgtcttctgcaatatctgtagag
agcaatgtgtctgctgtaagtagcatagctaaaatgcacgtagctgtgaataacggcagt
acaaagaacactgacgatgaacaagtgggattctgtaaacctgcaaaaactctgaaggaa
gggagtgtgttagatattttgagaagtccaggcttttcatcttcaccttcccaggtgact
tcagcatttactcctaacagaagcacaccaaccctcacaaagactgtgggaaatacattc
tcccctgcaaaagtatcattgggtgtaggaagcaagcaaggtttgggactttggcagtgt
agtgcatgttttcatgagaatatgttatctgatagcaactgtattgcttgctctgctgaa
gcatccaagaaactacctgcttcaccaccaagtagcaatacaaaaaacactgttcctctt
tctagtgaaccaggactaggcgacctatttaaactgcccgcaggcatgtggaattgtgac
acttgtttagtgcagaacaaagcagaagtaacaaagtgcgttgcttgtgaaacccccaaa
cctgggacaagcatgaaagctaccttgttgataccttccaccacgaaggctataaatcca
gccacaaatactcttgcttttgcttcaagcatttcaaataaagacgtctgcaaaaagcct
atgggatcttgggagtgcacatcttgccatatgcagaataaaacggaggataatacatgt
gtgggctgcacagcagagaaaccaggaaccatcaagagcttatctactgctgcaccatca
gggctgctgggaatgttggatcagtttaagaaaccagctggcagctgggattgtgacgtc
tgcttaatacaaaacaaaccagaggccaccagatgtgttgcatgtgaaagtgccaagcca
ggcgccaatgctgaaatgaaaggtagttttgatacagtgagaaattctgtttcagctgca
ccccttacttcagggcagattggattgctagatcaatttaagaagtcagcaggaagctgg
gattgtgatgtgtgcctagtagaaaacaaaccagaagccacaaaatgcgttgcctgtgag
agcgcaaagccgggcaccaaagcagagttaaaaggttttggaacatcaaccttttcctct
ggaacaactgctccgaccttcaagtttggtgtgaagccttcagatagcactggagagtta
aaatctggtgaagctacaggccctgaaagtggcttttcttttgccaaacctgtaggggat
tttaaatttggtttagcgtctgcatccacaacaaccgaggaatctggcaagaaaagcttt
acatttggctcttctactaacaatcaagtttcagcaggttttaagtttggtgttaccagc
tctgctcagacaaaaacagacaccctaagccagtctagcacaagtggtttcaaatttggc
tcggtttccaacactgtttctcttgctcctgctgcaattagttcagggttgcaagtggca
gccgcaaacgatgattctaatcttgccgctacagctggcttaaaatcagtacaagagaaa
aagcctgaagcacctaccacgacaccctttacttttggtaaaaccgatcaaaataaagag
actgtatccacttcttttgtctttggaaagaaagatgaacagacagactctgctccatcc
gggcaaaaaaaggatggggaagaacctaagccgtttctcttcggaaaacctggggcagcc
aaagatggcagtacagcatctgctggttttacttttggagtgtctaatcctacagagaaa
aaggatgaacagcctggaaaatctgtttttgcctttggtgctcaaacttcaactacagat
gctggagcttccaaacagcctttcagttttctgaccagtgtctcctccactgcagattca
tcaagtacttctggtgtctccagcagtgtgtttggcagtgtgactcagtcaagctcttct
gtaaaccctactaatgtgtttggcagtgctatttcagcaaatgttcctgctgcatctact
gctgtattcgggaacctccctccatcaaatgcccctgcagctcctagcactttgtttggt
aatgttgctccctccagtaccccttcaggctccagtgctttgtttggctctacaacctca
tccagttctcctgccagttccactagcttgtttggttctgcagctaaattgagtgctcct
gtagcttctggaggtgtatttaacagtgcggcacctgctgccccggcatccacttcaagt
agtgtgtttggcaatgcagcttcttccacaaacacttctgggaattctgtgaacatattt
ggaagctctgctggaacctccagcgcccctggggcttttgtgtttggacagccagctagt
actgctagcactgtttttgggaactcgatcgaatcaaaatcgacctttgttttctctggt
caggagaataaaccagtgtcctctgcaagtacttctgtgactccatttctatttggagca
gcatctgccagtactaccccagcagctccaagttttaactttggacaaacaaacgcctca
aatgtgacaggcagtagctcttctccatttatctttggcactggctcaactggccctgct
tcatcaagcttaactgccaatcccgtgccagcatttgggcaaagtgctaacccgtctact
gcacctgcttttggttcttcaactttagtgtttccagctggtaatcctcagcaagtgcca
gcctttgggtctagtagttcccaaccccctgtgtttgggcagcaagccgctcagccttct
tttggatcatctgctgcacccagcgctggatctggttttcagtttggcaacaacccaaac
ttcaactttaccagcacaaattcttcaagtggagtcttcacttttaatgcaaattcagaa
tccaccacccagccacctgcaccaggctttatgtttaatgcagtcacaccaggctttaac
aaaggaacgaatggcaggacaactccagcatcttctatttctaatcggaagataaggacg
gccagaagaagaaaataa
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integrated database retrieval system
