Xenopus laevis (African clawed frog): 121393038
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Entry
121393038 CDS
T01010
Name
(RefSeq) eukaryotic initiation factor 4A-III-A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121393038
09122 Translation
03013 Nucleocytoplasmic transport
121393038
03015 mRNA surveillance pathway
121393038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
121393038
03041 Spliceosome [BR:
xla03041
]
121393038
03009 Ribosome biogenesis [BR:
xla03009
]
121393038
03012 Translation factors [BR:
xla03012
]
121393038
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121393038
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121393038
mRNA cycle factors
Stress granule specific factors
121393038
Spliceosome [BR:
xla03041
]
Complex C
Other components
EJC/TREX
121393038
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
90S particles
Helicases
121393038
Translation factors [BR:
xla03012
]
Eukaryotic type
Initiation factors
eIF-4
121393038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
121393038
NCBI-ProteinID:
XP_041420293
UniProt:
A0A8J1KU59
LinkDB
All DBs
Position
5S:complement(30423036..30439967)
Genome browser
AA seq
415 aa
AA seq
DB search
MAAAAVAGVAGLTSGAGRKRLLREEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAY
GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTR
ELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSL
RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDP
IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK
MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN
NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcagctgttgcaggagttgccggattgaccagcggcgcaggccgcaagcgg
cttttacgggaggaggatatgaccaaggtggagttcgagaccagcgaggaggtggatgta
acgccaacgtttgatacgatgggcctgagggaagaccttctgagaggcatctatgcttat
ggatttgagaaaccatcggctatacaacagagggcaatcaagcagattatcaaaggaagg
gatgtgatcgcacaatcacagtctggtacaggcaaaacagcaactttttgtgtttctgtg
ctacagtgtttggatattcaggtccgtgaaacccaagccttgattttagcacccaccaga
gagttagcagggcaaattcagaaggtgttgcttgctttgggggactacatgaatgtgcag
tgtcatgcgtgtattggaggcacaaatgttggagaggatatccgaaaattggattatggg
cagcacgttgttgctggaacaccagggcgtgtttttgatatgattcgacgcagaagttta
agaactcgggccattaaaatgttagtgctggatgaagctgatgaaatgttgaataagggt
ttcaaggagcagatttatgatgtatacaggtatctgcctccagcaacacaagtttgttta
atcagtgctaccctgccacatgaaatcctggaaatgaccaataagtttatgactgatccc
atccgtatccttgtgaaacgtgatgagttgacactggaaggcatcaagcagttttttgtg
gcagtggagagagaagagtggaagtttgatactttgtgtgatttatatgatactttgact
attacacaagctgtaatcttctgcaacaccaagagaaaggtagattggttgactgagaaa
atgagagaagcaaatttcaccgtttcgtcaatgcatggtgatatgccccaaaaggagaga
gagtcaatcatgaaagaattccgatctggtgcaagccgagtcctcatatcaacggacgtc
tgggcccgaggattggatgtgccacaggtctccttgattatcaactatgatcttcccaat
aacagagaattgtacattcacagaattggccgatcaggaagatatggaagaaagggtgtt
gccattaactttgtcaagaatgatgacatccgtatcttaagagatattgagcagtactat
tcgacccagattgatgaaatgccaatgaacgttgctgatctcatttga
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