Xenopus laevis (African clawed frog): 373764
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Entry
373764 CDS
T01010
Symbol
col4a1.L
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
373764 (col4a1.L)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
373764 (col4a1.L)
09142 Cell motility
04820 Cytoskeleton in muscle cells
373764 (col4a1.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
373764 (col4a1.L)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
373764 (col4a1.L)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
373764 (col4a1.L)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
373764 (col4a1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
373764
NCBI-ProteinID:
XP_018102694
Xenbase:
XB-GENE-6252694
UniProt:
A0A8J0U7X5
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Position
2L:121973903..122067473
Genome browser
AA seq
1669 aa
AA seq
DB search
MSWRLLIALLILIGLVGTGDSAACNGCGTSKCDCSGVKGQKGERGLPGLTGLMGFPGLQG
PEGPPGPMGQKGDTGEPGLPGTKGTRGPPGSHGFPGNPGLPGIPGQDGPPGPSGIPGCNG
TKGERGPVGPSGLPGIIGYPGSPGQPGPKGEPGDITGIDVSMVKGEKGFPGINGLPGTPG
LPGTPGVMGPIGPAGPSGPPGTPGAPGPKGEMGISFYGPKGEKGEQGPVGAPCKSTTEPQ
DKDKDDQIYYGEKGEKGMPGEEGERGQPGQSFKGEKGEPGPSGPRGKPGKDGDQGDKGFP
GVPGIPGFSGPPGLGGTKGEKGETGPQGPPGTVIGDGDTTVCEKGDRGLPGFSGNKGEKG
LKGTHGVPGLPGSPGLPVPGATGPPGFPGERGEKGEHGLPGLALQGPKGRDGFTGPPGLP
GPPGVIDTSLECVSGLQGDSGLPGNPGQNGFQGERGQKGDKGDACPSCDLVPPGLPGPPG
PQGPPGDQGVPGVPGIKGDRGQPGYDGLPGAPGPQGGPGLMGSPGAKGEPGEVYFEPRLK
GDKGDGGLPGQPGTPGRDGRPGSDGQQGQPGPKGVSGTIGSKGEQGPPGDRGSPGNPGER
GFPGPAGIGPSGPSGDKGEAGVPGFVGIPGAPGAKGEPGKAIIKTGPPGPMGGAGVPGFP
GDQGEKGSPGLPGRPGPQGEKGEHGLHGIGYPGPPGEKGFQGMPGTPGQAGFPGPQGLDG
LPGLRGEFGQKGEPGLGLPGPKGVQGPPGPFGIPGEKGHYGAPGVPGEQGFSGVPGHPGS
KGEPGIVGVPGIQGPPGVPGMGPKGQPGLMGPQGPPGFQGPAGVKGERGYAGFPGLDMPG
PKGDKGNVGFPGQTGVTGIPGLPGAPGKEGLPGYQGPKGEMGVMGTPGSIGPQGTPGSPG
PLGEKGDPGPVGSPGTAGYPGTKGDKGEAGLPGVPGKMSETDKENMKGSKGDQGERGKIG
ISGEKGSIGASGSAGMPGKDGLRGVPGEPGSKGEKGTQGMQGTPGLPGHKGSMGEMGLPG
PLGEKGHHGIPGSTGSPGLEGIKGEKGTKGEVGLPGIGIPGVPGVKGDAGRDGPHGLPGE
KGEKGYVGIPGMPGFPGTKGATGQVGIPGRPGLPGEKGAIGTPGLVGTPGLKGQSGDAGV
QGPPGHSGEKGEPGYDGIPGSPGEKGESGIPGRGIPGFPGEQGEKGFKGDIGFPGAPGIP
GVPGIKGDHGLPGTQGPQGTPGFPGPPGIPLEGPKGDRGQPGQAGFPGSPGPVGLPGLPG
QDGIKGERGERGWPGAPGFQGFKGDLGIEGPSGDAGPPGVTGQKGDTGPPGIPGFPGLKG
SIGIFGEKGDHGDRGVPGPKGDLGPPGPAGTHTVIKGEDGGPGPQGPSGPRGIQGLPGLK
GEKGVSGVTGLPGPSGTPGIHGTPGQKGESGPSGPSGPRGYPGPPGSDGMPGPTGLPGSP
SMAHGFLVTRHSQTTDTPQCPFGTTAVYSGYSLLYVQGNERAHGQDLGASGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIKPFISRCTVCEVPAMVMAV
HSQTIQIPQCPDGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIECHGRG
TCNYYANTYSFWLATIEKNEMFKKPTPSTLKAGDLRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaggctactgattgcgctgctcatattgatagggcttgtcggcaccggtgat
tctgcggcctgcaatggatgtggaactagcaaatgtgactgcagtggagtaaaaggacaa
aaaggggaaagaggtctgcctggtttaactggattaatgggctttccgggactccaagga
ccagaagggccacctggaccaatgggtcagaagggtgacacaggagaaccaggtcttccc
ggcacaaaaggaaccagaggtccacctggttctcatggatttccaggaaacccaggtctt
cctggtatacctgggcaggatggtccaccaggtccatctgggattccagggtgtaatggc
acaaagggtgaaagaggacctgtcggaccatctgggcttcctggaataattgggtatcct
ggatcacctgggcaaccaggaccaaaaggagaacctggagatatcactggaatagatgta
tctatggtaaaaggagaaaaaggttttcctggaattaatggattaccgggtacacctgga
ttgccagggacgccaggagttatgggaccaattgggccagcaggaccttcaggacctcca
ggtacaccgggtgctccaggaccaaagggtgaaatgggcataagtttttatggaccaaag
ggggaaaagggtgaacagggacctgtaggtgctccttgcaaatccacaactgaacctcaa
gacaaagataaggatgatcagatatattatggagaaaagggagaaaagggtatgcctggt
gaagagggagaacgtggacaaccaggacaaagctttaagggggaaaaaggagagcctggg
ccatcagggccccgaggaaaacctggaaaagatggtgaccagggtgataagggatttcca
ggagttccaggtattccaggattttcaggacctccaggactgggtggaacaaaaggagaa
aaaggtgaaactggaccacaagggcctccaggaactgtaattggggatggtgataccaca
gtatgtgaaaaaggagaccgtggactgcctggttttagtggaaacaaaggagaaaaaggt
cttaaaggtactcatggagtgccaggcttaccaggatccccagggcttccggttcctgga
gctactgggccacctggttttcctggtgagagaggtgaaaagggtgaacatggattgcca
gggctagctcttcaagggccaaaaggcagagatggctttactggtcctcctggattgcct
ggtccaccaggtgttatagatacaagtctagaatgtgtaagtgggctgcagggagactct
ggattacctggaaatcctggacaaaatggattccaaggggagagagggcagaaaggtgat
aaaggtgacgcatgcccttcatgcgatttagttccaccaggacttcctggtccaccaggt
cctcaaggacctcctggagatcaaggtgtgcctggtgtaccaggaatcaaaggcgataga
ggtcaaccaggctatgatgggttaccaggagctccgggacctcaaggtgggccaggttta
atgggaagccctggtgcaaaaggagaaccaggggaggtatattttgagccaaggctaaaa
ggggataaaggagatggaggattacctgggcagcctggaacacctggaagagatggaagg
ccaggcagtgatgggcaacaaggacaaccgggtccaaaaggtgtatcgggaacaataggt
tcaaaaggtgaacaaggacctcctggtgacagaggatctcctggaaaccctggagaacgt
ggatttccaggaccagctggcatagggccttctggaccatctggtgacaaaggagaagct
ggtgttcctggatttgtaggcatacctggtgcacctggtgctaaaggtgaacctggaaaa
gctattatcaaaacagggccaccagggccaatgggaggtgcaggggttcctggctttcca
ggggatcaaggtgaaaaaggatctcctggacttcctggaagaccaggaccccagggggag
aaaggcgaacatggtttacatggtataggatatcctgggcctcctggtgaaaaaggtttt
caaggaatgccaggcacacctggtcaagctgggtttcctggtccacagggacttgatgga
ttaccagggttaagaggggaatttggacaaaagggcgaaccaggtttgggtcttccaggc
ccaaaaggagtacaaggaccacctggaccttttggaattcctggagagaaaggacattat
ggtgcaccaggtgtgccaggggaacagggattttcaggtgttccaggccatccagggagc
aaaggtgagcctggtattgtgggtgttccaggaattcaaggacctccaggtgtacctgga
atgggacctaaagggcaaccaggacttatgggaccacaaggtcctccaggatttcaagga
cctgctggagttaaaggagaacgtggctatgctggtttcccaggattagacatgccagga
ccaaagggagacaaaggaaatgtaggatttcctggacaaacaggtgtaacaggaattcca
ggcctgccaggtgcaccagggaaagagggccttccaggttatcaaggaccaaagggagaa
atgggtgtcatgggaacgccaggaagcattggaccacaaggaaccccaggcagtccggga
ccattaggtgaaaaaggtgaccctggtcctgttgggtctcctggcacagctggatatcct
gggacaaaaggagataagggtgaagcaggattgcctggtgtacctggtaaaatgtcagaa
actgacaaggaaaatatgaagggtagcaaaggcgatcaaggagaaagaggtaagattggc
atctctggtgaaaagggatctattggcgcatctggcagcgcaggaatgcctggaaaagat
ggactgagaggagtaccaggagagccaggatctaaaggagaaaagggtacacaaggcatg
caaggaaccccaggacttccaggacacaagggatctatgggagagatgggtttgccaggg
cctttaggagaaaagggtcaccatggaattccgggatcaacaggaagccctggtttggaa
ggaataaagggagaaaaaggaacaaagggtgaagtgggtcttccaggtatcggaattcca
ggggtgcctggtgttaagggtgatgctggaagagatggtcctcatgggttaccaggggaa
aagggtgaaaaagggtacgttggtattccaggaatgccaggattcccaggtaccaaagga
gccacaggccaagtaggcatcccaggtagaccaggtcttccaggagaaaaaggtgccata
gggacccctggattggtgggcactccaggcctaaaaggacaatcaggtgatgcaggtgtt
caaggtcctcctggccattcaggagagaaaggtgaacctggttatgatggaattccaggc
tcacctggtgagaagggagagtcaggcatacctggtaggggaattccaggatttccgggg
gaacagggagaaaaaggtttcaaaggtgacattggcttccccggtgcacctggaattcct
ggtgtcccaggtatcaaaggtgatcatggattacctggtacccaaggccctcaagggaca
cctgggttccctggacctccaggaataccactagaaggccccaaaggtgacagaggacag
ccgggtcaagcaggatttccaggttctccaggccctgtaggacttccaggccttcctgga
caggatggtataaaaggcgaaagaggagaaagaggatggcctggagcacctggatttcaa
ggttttaaaggggatcttggaattgaaggaccatcaggagatgcaggtcctccaggtgta
actggtcaaaaaggagatactggacctccaggaattccaggttttccaggtttaaaaggt
tctataggtatatttggagaaaaaggtgatcatggtgacagaggagtacctggacctaaa
ggtgatttgggtcctcctggacctgctggtacacacacagtcattaaaggagaagacgga
ggtcctggaccacaaggtccttctggtcctagaggaattcagggattgcctggtctaaaa
ggggaaaaaggtgtatctggtgttactggattgcctggaccaagtggtacgccagggata
catggtaccccaggtcaaaaaggagagagtggtccaagtggcccatcaggtccaagagga
taccctggccccccaggcagtgatggcatgccaggacctacaggcttgcctgggtcacct
tctatggctcatggttttcttgttacaaggcacagtcagacaactgatacaccacaatgt
ccttttggaacaactgctgtttatagtggatattcactgctctatgtccaaggcaatgaa
agagcacatggtcaggacttgggggcttccgggagttgtcttcgtaaatttagcacaatg
cccttccttttctgcaatattaataatgtctgcaattttgcttcaaggaatgactattcc
tattggctttccacaccagagccaatgccaatgagcatggctcccatcacaggggaaggt
attaaacctttcatcagcaggtgcactgtgtgtgaggttcctgccatggtgatggctgtt
catagtcaaacgattcagatacctcagtgcccggatggatggatttcactatggattggg
tattcttttgtaatgcaaaccagtgctggtgctgaaggctctgggcaagctctggcatcc
ccaggatcctgtctagaagagttcaggagtgtaccatttattgagtgccatgggcgtgga
acctgtaactactatgccaatacctacagcttttggcttgcaacaatagagaagaatgag
atgttcaaaaaaccaactccttcaacactaaaggctggagatctacgcacacatgtcagc
cgctgccaagtttgcatgagaaggacataa
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