Xenopus laevis (African clawed frog): 373841
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Entry
373841 CDS
T01010
Symbol
irx5.L, iroquois-5, irx5, irx5-A, Xiro5
Name
(RefSeq) iroquois-class homeodomain protein irx-5
KO
K24889
iroquois-class homeodomain protein IRX
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
373841 (irx5.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
373841 (irx5.L)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
Motif
Other DBs
NCBI-GeneID:
373841
NCBI-ProteinID:
NP_001079223
Xenbase:
XB-GENE-865076
UniProt:
Q90XW5
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Position
4L:34597708..34601121
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AA seq
474 aa
AA seq
DB search
MSYPQGYLYQPSASLALYSCPAYSTTVISGPRTDELGRSPSGSAFSPYAGSTAFTASSAG
FSSPLQYSGDPAAAFTSYVGSPYDHSAGMAGSLEYHPYAAPLGIYAYGDPAYRKNASRDA
TATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNR
SEDEDDDENIDLEKNEEDDPSKLEENGNQDGDAGDQKRSPDGVDFVRLEGEVHLGKELDQ
TRNNSELNELDERNGHLSNSSSPPTPPLCPPDQSPQAQEDQNLHGHTHQSIQQLLHHSNQ
PHPLDLVNRNTSVQHGPVTNNATSVIHSPPASTSKPKLWSLAEIATSSDKVKERSNAAEV
AGTTAAKSMVVSASSPSRSPSAQCHFPNNTVLSRPLYYSIPFYPGYTNYGTFSHLHSHHG
PSSSVNSTYHFNGINQPVLNKAEGLAKECKHISQSQDDLNKGTPYEMKKGMSSI
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatccgcagggctacttgtaccaaccatctgcttctttggctctgtactcctgt
cctgcttacagcaccactgtcatctctggacccaggactgatgagctggggaggtcccct
tctggctctgccttctcaccttacgctggatctacagcttttactgccagctccgctggc
ttcagctctcccctccagtacagcggggacccagctgctgcctttacttcctatgtgggc
tctccatatgatcacagcgctggcatggctggatcattagaatatcacccgtatgctgcc
cctttgggaatttacgcttatggcgacccagcttataggaaaaatgccagcagggatgca
actgccactttgaaggcgtggcttaacgaacacaggaaaaatccttacccaacaaagggc
gagaaaattatgctggctatcattaccaagatgaccctaactcaagtgtccacctggttt
gctaatgcaaggaggagactaaaaaaagaaaataaaatgacatggactccgaggaacagg
agtgaggatgaggatgatgacgaaaatatcgatctggaaaaaaacgaagaagatgaccca
agtaaacttgaagaaaatgggaaccaagatggagatgcaggggatcaaaagaggagtcct
gatggggtcgattttgtccggttagaaggcgaagtacatctgggtaaggagttggaccag
acaaggaacaattctgaactgaacgaattagatgaaagaaatggtcatctgtccaatagc
tcttctccccccactccacctctgtgccctccagatcagtctccgcaggcccaagaagat
cagaatttgcatggtcacacccaccagtcaatccagcaactacttcaccacagtaaccag
cctcatccattagacctggtaaataggaacacttctgtccaacatggcccagtcaccaac
aatgccacctcagttatccactctccaccagcttccacctcaaagcctaaactctggtcc
ttggcagagatagcaacttcttcggacaaagtcaaagaaagaagcaatgctgctgaagta
gcagggaccactgcagctaagtctatggttgttagtgcctcttctccatctagatctcct
tcggcacagtgccatttccccaacaacaccgttttgtctcgccccctttattacagcatc
cccttttaccctggctatacgaactatggcacgttcagtcaccttcacagccaccatgga
cctagctcatcggttaacagcacttatcatttcaatggaataaaccagcctgtattaaac
aaagccgagggtttggccaaagagtgcaaacatataagccagtcccaagatgacctaaat
aaaggcacgccttatgaaatgaagaaaggtatgtctagcatttaa
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