Xenopus laevis (African clawed frog): 379132
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Entry
379132 CDS
T01010
Symbol
cldn1.S, claudin-1, cld1, cldn1, ilvasc, semp1
Name
(RefSeq) claudin 1 S homeolog
KO
K06087
claudin
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03272
Virion - Hepatitis viruses
xla04382
Cornified envelope formation
xla04514
Cell adhesion molecule (CAM) interaction
xla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
379132 (cldn1.S)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
379132 (cldn1.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
379132 (cldn1.S)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
379132 (cldn1.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xla03037
]
379132 (cldn1.S)
04147 Exosome [BR:
xla04147
]
379132 (cldn1.S)
Cilium and associated proteins [BR:
xla03037
]
Other cilia and associated proteins
Stereociliary proteins
379132 (cldn1.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
379132 (cldn1.S)
Exosomal proteins of colorectal cancer cells
379132 (cldn1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
Claudin_2
L_HMGIC_fpl
DUF1218
Cytochrom_B_C
DUF6336
Motif
Other DBs
NCBI-GeneID:
379132
NCBI-ProteinID:
NP_001079445
Xenbase:
XB-GENE-951614
UniProt:
Q8AVG4
A0A974CS90
LinkDB
All DBs
Position
5S:89109417..89119312
Genome browser
AA seq
211 aa
AA seq
DB search
MANAGLQLLGFALACLGWIGFIVCIAIPQWKMSSFAGDAIITAQITYEGLWMSCVMQSTG
QMQCKSFDSLLKLDSTIQATRALMICGILVGFFAMCIAAVGMKCLTCLQDDEVKKAKVGV
VGGALFIVAGLCVLIATAWYGDKIAKDFYNMFTPTNSKYEFGPALFIGWAGAALAIIGGA
LLCCSCPRKETSYPPPRGYNKSAPPAGKDYV
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgcaggcttgcaacttttaggattcgccttagcttgtctgggctggattggg
tttatagtatgtattgcaatccctcaatggaaaatgtcatcatttgctggggatgccatt
atcacagcacagataacctatgaaggactctggatgtcttgtgtaatgcagagcacaggg
cagatgcagtgcaaatcttttgactcattgctgaagctggacagtactatacaggccacc
cgagcattgatgatctgtggaattcttgttggtttctttgccatgtgcattgctgcagta
gggatgaaatgcttgacatgtcttcaggatgatgaagtaaagaaggcaaaggttggagta
gtgggaggagcactcttcattgttgctggtctctgtgttttgatagcaacagcttggtat
ggagataaaatcgcaaaggatttttacaatatgttcacaccaaccaattctaaatatgag
tttggccctgccttatttattggatgggctggagctgcgctagcaatcattggaggtgct
ttgctctgttgctcttgtcccagaaaagagacttcctacccaccaccaagaggctacaat
aaaagtgcaccacctgctggaaaagattatgtgtaa
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