Xenopus laevis (African clawed frog): 379378 Help Entry 379378            CDS       T01010                                  Symbol sympk.S, sympk Name (RefSeq) symplekin   KO K06100   symplekin Organism xla  Xenopus laevis (African clawed frog) Pathway xla03015   mRNA surveillance pathway xla04530   Tight junction Brite KEGG Orthology (KO) [BR:xla00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     379378 (sympk.S)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     379378 (sympk.S)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:xla03021]     379378 (sympk.S)    03019 Messenger RNA biogenesis [BR:xla03019]     379378 (sympk.S) Transcription machinery [BR:xla03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      379378 (sympk.S) Messenger RNA biogenesis [BR:xla03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      379378 (sympk.S)     U7-dependent histone pre-mRNA processing factors      379378 (sympk.S) SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N TOR1L1_N Cohesin_HEAT Motif Other DBs NCBI-GeneID:  379378 NCBI-ProteinID:  NP_001079691 Xenbase:  XB-GENE-941665 UniProt:  Q7ZYV9 A0A1L8F3F9 LinkDB All DBs Position 8S:79615877..79645527 Genome browser AA seq 1202 aa AA seqDB search MAVSMASQFFSQEEGTSEVVSTSERVVELLNMAALATNDTKITMLKQVQELIINKDPTLL DNFLDEIIAFQADKSVEVRKIVVNFIEEACKLDNELLIKLIANLHMLLKDENVNVVKKSI LTMTQLYKVALQWVARSRPPSEQQESCWDLVTEMAADILLLLESDNDGMRTHAVKFVESL IVTLSPRTADSEVPKRQDGDISLEQIPPDHQFLKYNTLRDLGKQAVKELLKFMAHPAISS INLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLQLLSVLR HPSSYEYQGPISTLLLDLGTSQGEITRHLPPPRDSNRKRAREDGEGGQKKSRTDIPLPDD DDDKDTMQLPTIPAPAPSTQSATDITADFVRPLLSPENVANLVLISMVYLPDSMPASFQS TYTPVESAGTDSQIRHLARLMATQMSAAGIGPGVEQSKDIPVDVVEEENIKPEGLVIKRR ISALTKGQAISVLGCQSEKTKEEEEEEDDAPLAKKRPEPILPATQIRPSGVGGRKKVFRL KEVTEPLTDVQIKSLKLGAVRRILQAERSVGSSGASQMRVKVLARLVTQLDISVKAEVLS HFLNDPRMRLDLALAWLYQEYCEYQSGAGEEGYQECLIGILTGLQERPDQRDGVFTKVVL EAPLLTDSALDVLRKYCEDEGRSYLGMSTLRDLILTRPARQFQYLHLLLDLSSHEKDKIR QQSLHFIKRMYEKESLRPYIEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEDTVKQ CLYLYLALLPQNHKLIHELASVYTEATADIKRTVLRVIETPIRGMGMNSPELLLLVENCP KGAETLVTRCLHILTDKVPPSPELVKRVRELYHKRLPDVRFLIPVLNGLDKKEVIQALPK LIKLNPIVVKEVFNRLLGTQHGEVSSSLSPLTPGDLLVALHNIDSSKCDMKSVIKATNLC FSARSVYTSEVLAVVLQQLMDTTPLPMLLMRTVIQALGMYPRLGGFIMNILTRLIYKQVW KYPKVWEGFIKCCQRTKPQSFSVLLQLPPPQLLSVLQTSPDLRDPLLAHVRAFTPHQLAH VPHSIMAILEAESRTDAGAEEAAQVEEEQETPAQDIIARRLAQEKSLKKQIEEQKGRNNQ EMEEVAEVDPPAIFIAEEEEEESLKSQGKEEPQEDSSSNATTAEKSPVADEPMEEEPVEK KD NT seq 3609 nt NT seq  +upstreamnt  +downstreamnt atggcggtcagtatggcatcccaattcttctcccaagaggaggggacatcagaagttgta tccacatctgagagggttgtggaattattgaatatggctgctcttgctacaaatgataca aaaattaccatgctcaaacaggttcaagaactcatcataaacaaggatcccactttgctg gacaactttcttgatgaaataattgcttttcaagcagacaaatctgtagaagtccgaaaa attgtggtgaatttcatagaagaagcttgtaaactggataacgagcttctcattaaatta attgccaacctccatatgctgctgaaggatgagaacgtcaatgtggtgaagaagtccatt ctgaccatgactcagttgtataaagtggctcttcagtgggttgctcgctcccgccctcca tctgagcaacaagaatcatgctgggaccttgtaacggagatggccgcagacattctcctc ctgttggaatctgataatgatggcatgcgcactcatgctgtaaaatttgtagaaagtttg attgtcaccttgtcacctcgtactgctgacagtgaagttccaaaaagacaagatggggac atcagcctagagcagatccctcctgaccaccaattccttaaatataatacgttgcgagat ttagggaaacaagctgtgaaggaacttcttaagttcatggctcatcctgctatctccagc atcaaccttacggcagcccttggatcattagcatcaattgcccgtcagaggcctatgttt atggcagaagttatccaggcttatgagaccctgcatgcaaacctgccccctacgttggct aaatcacaagtgagtagcgtgcggaaaaaccttaagctgcagctactgagtgtattgcgt catccatcatcttatgagtaccagggacccataagtactctcctgttagacttgggtacc agccagggagagataaccagacaccttcctcccccaagggacagcaacaggaaaagagcc cgagaagatggtgaagggggacaaaagaagagccgtacagacattccactacctgacgac gatgatgataaagacacgatgcagcttccaaccattcctgctcctgcaccaagcacacag tccgctacagatatcacagctgattttgttcgcccactgctttctccagagaatgtagca aacctggtgctcatcagtatggtatatctaccggactccatgcctgcatccttccagtcc acttacactccagtggagtcagctgggactgattcccagattcgccatcttgctagactc atggctacacagatgtcagcagctggcattggtccaggggttgagcagtcaaaagatatt ccagtggatgtagtggaggaagagaacatcaagcccgagggactggtgatcaaaaggcgg atctctgcacttaccaaaggacaagctatatccgttttgggatgtcagagtgagaaaact aaggaagaagaagaagaggaggatgatgctccacttgccaagaaaaggcctgagcccata cttccagcaactcagattagaccttctggcgtaggaggtcgtaagaaggtatttcggttg aaggaagtcacagagccacttacagatgttcaaattaaatccttaaaattgggagctgtg cggcggatcctccaggcagagcgttcagtgggtagttcgggggcttcacagatgcgagtg aaggttctggcacgtcttgtgactcaactagatataagtgtaaaagctgaggttttgtcc cactttctgaatgatcctcgaatgcgacttgacctagctttggcttggctgtaccaggag tactgtgaataccagtctggtgcaggggaagagggataccaggaatgtcttattgggata ttaactggtttgcaagagcggcctgaccagcgagatggggtctttacaaaagttgtcctt gaggctcctttgctcacagactctgctctggatgtgttgcggaaatactgcgaggatgag gggcgcagttacttgggtatgtccactttgcgggatttaatcttaactcgcccagcacgc cagttccagtatctgcatcttttgctggatttgagctctcacgaaaaagataagattcgc cagcagtcactccactttattaaaagaatgtatgagaaagaaagtcttcggccatacatt gagaaatttgctctcaattacttgcagcttttagtccaccctaacccaccatctgttctt tttggggcagataaggacacagaggtggctgctccatggactgaggacactgtaaagcag tgtctctatctttatctggcactgctgccacagaatcacaaactgattcacgagttggcg tctgtctacactgaggccacagctgatatcaagaggactgtgctgagagttatcgaaaca ccaataagagggatgggaatgaactcccctgaattgcttctgttagtagaaaactgtccc aaaggagccgagactttagtgactcgctgcctgcatattttgactgacaaagtgcctcca tcccctgaattagtaaagcgtgtcagagagctgtatcacaagaggctcccagatgtcagg tttttgatccctgtgcttaatggactcgacaagaaagaagtaattcaggcattaccaaaa ctaataaagctgaacccaatagtggtgaaggaagtattcaacagattgttggggacacag catggtgaagttagttcctccttgtctcctttgacccctggagatcttttggttgctctt cataacattgattccagtaaatgtgatatgaaatcggtcataaaggccaccaacttgtgt ttctctgcccgctctgtgtacacatcagaggttcttgctgtggtccttcaacaactgatg gacaccactcctctccctatgcttcttatgaggacagttatccaggctctaggaatgtat cccagacttgggggattcatcatgaacatacttactcgtctcatttataaacaggtttgg aaatacccaaaggtttgggaaggctttattaaatgctgccagagaaccaaaccacaatca ttcagtgttctgctccagcttccacccccacaactactttctgttctccagacatcccca gacctccgtgatcctcttcttgcacatgttagggcttttacaccacatcagctggcacat gtcccgcattccataatggctattctagaggctgaatcaagaacagacgctggagcagaa gaggctgcacaagttgaagaggagcaagaaaccccagcccaggatatcattgctcgaagg ttggctcaagaaaaatccttaaaaaaacaaatagaagaacagaaggggcgaaacaatcaa gagatggaggaggtagcagaggtagacccacctgccatctttatagctgaggaagaagag gaggagtcattgaagtctcaagggaaagaggaaccccaagaggacagtagtagtaacgct accactgcagaaaaatctccagtagctgatgaacctatggaagaggaaccagttgagaag aaagactga

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