Xenopus laevis (African clawed frog): 379390
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Entry
379390 CDS
T01010
Symbol
ddx5.S
Name
(RefSeq) DEAD-box helicase 5 S homeolog
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
379390 (ddx5.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
379390 (ddx5.S)
03009 Ribosome biogenesis [BR:
xla03009
]
379390 (ddx5.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
379390 (ddx5.S)
Spliceosome [BR:
xla03041
]
Complex A
U1 snRNP components
U1 related factors
379390 (ddx5.S)
Complex B
379390 (ddx5.S)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
Pre-60S particles
Helicases
379390 (ddx5.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P68HR
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
379390
NCBI-ProteinID:
NP_001079703
Xenbase:
XB-GENE-17340555
UniProt:
Q801P9
LinkDB
All DBs
Position
9_10S:46728592..46736822
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AA seq
607 aa
AA seq
DB search
MPGFNDRARDRGFGGGPRFGGNRGGTSGKYGNPGERLMKKKWNLDELPKFEKNFYQELPD
VSRRTPQECDQYRRSKEITVRGLNCPKPVLNFHEASFPANVMEVIKRLNFTEPTPIQGQG
WPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQ
QVAAEYGRACRLRTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLNRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCNDGEKDDKLVRLMEEIMSEKENKTIVFVETKRRCDDLTRRLRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLVSVLREANQAINPKLLQLVEDRGRFRGR
GGMNDRRDRFSSGKRGGWGRENYDRGFGGKRDFGNKSQNGFGNKSQNGFGAQNYNGNSFN
SYNNNVQSGFRAGAQNGTYQNGYNTQQTGYSAPPMQNGMSQQAYTYPNATATAPAVVGYP
MQTSYPQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcccggttttaacgatcgcgcccgggataggggatttggaggtgggcctcgctttggg
ggaaacagaggtggaacatctggcaaatatggaaaccctggggagcggcttatgaagaaa
aaatggaacctggatgaactaccaaaatttgagaagaatttctatcaagaacttcctgat
gtttcaagacgaacaccacaagaatgtgatcagtacagaagaagcaaagagatcaccgta
cgagggcttaactgtccaaaaccagttctgaatttccatgaagcaagcttcccagcaaat
gtcatggaagtgataaaacggctgaacttcactgagcccactcccatccaaggacaggga
tggccagtggctctaagtgggctggatatggttggtgttgcaatgactggatcagggaaa
acgctttcttacctgcttcctggtattgttcacatcaaccatcaaccattcctacagcga
ggagacggtccaattcttttggtgctggcaccaaccagggaattggctcagcaggttcag
caagtagctgcagagtatggaagagcttgtcgtctgcggaccacctgtatttatggcggt
gctccgaagggaccacaaatccgtgatttggaaagaggagttgaaatctgcattgcaaca
cctggacgactgatagatttccttgaagcaggaaagaccaatctgaacagatgcacatat
ttggtactagatgaagctgaccgaatgcttgacatgggctttgagcctcagataagaaag
atagtggatcagattagacctgacagacagacgctgatgtggagtgccacttggcccaaa
gaagtcagacaacttgctgaagacttcctaaaggaatatgttcatattaacattggtgcc
ctggagctcagtgccaaccacaatatccttcagattgttgatgtgtgtaacgatggcgag
aaggatgacaagcttgtccgtttgatggaagaaattatgagtgaaaaagaaaataagacc
atagtatttgtcgagaccaaacgacgatgtgatgatttgactcgcaggttgaggagggat
gggtggcctgcaatgggaattcatggtgataaaagtcagcaggaacgtgactgggtgtta
aatgagtttaaacatggtaaatcgcctattctgattgctacagacgttgcttccagaggt
ttagatgtagaagatgtgaaatttgtcatcaattatgactaccccaactcctcagaggat
tatattcaccgaattggaagaacagcccgcagcagcaaaactggcacagcatacaccttc
tttacaccaggaaacattaagcaagtcaatgacctggtctctgtcctccgggaagcaaac
caagccatcaaccccaagctgttgcagctggtagaggacagagggcgcttcagaggcaga
ggaggaatgaacgacagacgtgaccgtttctcttcaggcaagcggggtgggtggggccgg
gaaaattatgaccgtgggtttggcggaaagagagactttggcaacaaatcccaaaatggc
tttggcaacaaatcccaaaatggctttggggcacaaaattacaatggaaactcctttaac
agctacaataacaatgtccagagtgggttccgggcaggtgcacagaatggcacataccag
aatggctacaacacccagcagactggctacagtgcacctccaatgcagaatggaatgagc
cagcaggcatacacatatccaaatgccactgctacagcacccgctgttgtaggttatcca
atgcaaacatcctacccccaataa
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