KEGG   Xenopus laevis (African clawed frog): 379507
Entry
379507            CDS       T01010                                 
Symbol
rab5d.S, m-ras, mras, r-ras3, rab5d, rras3
Name
(RefSeq) RAB5D, member RAS oncogene family S homeolog
  KO
K07888  Ras-related protein Rab-5B
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04137  Mitophagy - animal
xla04144  Endocytosis
xla04145  Phagosome
xla04148  Efferocytosis
xla05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:xla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    379507 (rab5d.S)
   04145 Phagosome
    379507 (rab5d.S)
   04137 Mitophagy - animal
    379507 (rab5d.S)
   04148 Efferocytosis
    379507 (rab5d.S)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    379507 (rab5d.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    379507 (rab5d.S)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xla04147]
    379507 (rab5d.S)
   04031 GTP-binding proteins [BR:xla04031]
    379507 (rab5d.S)
Membrane trafficking [BR:xla04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    379507 (rab5d.S)
 Endosome - Lysosome transport
    379507 (rab5d.S)
Exosome [BR:xla04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   379507 (rab5d.S)
  Exosomal proteins of other body fluids (saliva and urine)
   379507 (rab5d.S)
  Exosomal proteins of colorectal cancer cells
   379507 (rab5d.S)
  Exosomal proteins of melanoma cells
   379507 (rab5d.S)
GTP-binding proteins [BR:xla04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    379507 (rab5d.S)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase MMR_HSR1 SDR-like AAA_16
Other DBs
NCBI-GeneID: 379507
NCBI-ProteinID: NP_001079817
Xenbase: XB-GENE-865873
UniProt: Q7SY85
LinkDB
Position
9_10S:complement(75831025..75847740)
AA seq 213 aa
MANRGSLRANGAGQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQS
VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFDRAKAWVKELQRQ
ASPNIVIALAGNKSDLAEKRMVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAKKM
PKSDAQNPTHAAHNRGVNVHGSEQQPRSGCCGN
NT seq 642 nt   +upstreamnt  +downstreamnt
atggccaacaggggaagcttaagggctaatggagcgggacagacgaaaatctgccagttc
aagctggtgcttcttggagatatggcggttggaaagtccagtctagtactgcggtttgtc
aaaggccaatttgatgagtttcaagagaccaccataggcgctgcctttttggcacagtct
gtatgtctagatgatacaacggtgaagtttgagatctgggacacagcagggcaagagcgc
taccacagccttgcacctatgtactacagaggagcgcaggcggccattgtggtgtttgat
atcacaaaaccggagacatttgacagggcgaaggcttgggtgaaggagttacagagacag
gctagcccaaatatcgttattgctttggctggaaataaatccgatttggcagagaaacgg
atggtggagtatgaggaagctcaaacttatgcagaagacactggactcttattcatggaa
acatctgccaaaaccgccatgaatgtaaatgagttgtttttagcaatagcaaagaaaatg
ccgaaatccgatgcccaaaaccccacgcacgcggcccacaaccgaggtgtaaatgtccat
ggttcggagcagcagccaagaagtgggtgttgtgggaactga

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